Browse Element(s) Details


Os.11847.1.S1_at

Description gb:AK099999.1
DB_XREF= gi:32985208
TID=Os.11847.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11847 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013134K18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134K18, full insert sequence.
FL= gb:AK099999.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2269011/11nucleoporin interacting component, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22650NANA3+13057480..13058058hypothetical protein
LOC_Os03g22670Os.49739.1.S2_at11/113+13066237..13072596triacylglycerol Lipase, putative, expressed
LOC_Os03g22670Os.49739.1.S1_at10/113+13066237..13072596triacylglycerol Lipase, putative, expressed
LOC_Os03g22680Os.49023.1.S1_x_at11/113+13074632..13077118CHY zinc finger family protein, expressed
LOC_Os03g22680Os.53636.1.S1_at4/113+13074632..13077118CHY zinc finger family protein, expressed
LOC_Os03g22690Os.11847.1.S1_at11/113+13079157..13088173nucleoporin interacting component, putative, expressed
LOC_Os03g22690Os.32544.1.S1_at1/113+13079157..13088173nucleoporin interacting component, putative, expressed
LOC_Os03g22700Os.53969.1.S1_at11/113+13089745..13094569Protein kinase domain containing protein, expressed
LOC_Os03g22720Os.10709.1.S1_at11/113+13101461..13103329expressed protein
LOC_Os03g22730Os.6728.1.S1_at11/113+13104979..13109055Nucleolar protein NOP5, putative, expressed
LOC_Os03g22730Os.6728.1.S1_a_at11/113+13104979..13109055Nucleolar protein NOP5, putative, expressed
LOC_Os03g22730Os.6728.2.S1_x_at11/113+13104979..13109055Nucleolar protein NOP5, putative, expressed
LOC_Os03g22740Os.10111.1.S1_at11/113+13112402..13116321Nucleolar protein NOP5, putative, expressed
LOC_Os03g22740Os.6728.2.S1_x_at4/113+13112402..13116321Nucleolar protein NOP5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11847.1.S1_at--623--8791Chr03:13080411..13080435 (25 bp)
TGTTCAGAAACTTGTCACCGCATGT
LOC_Os03g22690
Os.11847.1.S1_at--817--8731Chr03:13080399..13080423 (25 bp)
TGTCACCGCATGTTCAAGCTTGTGT
LOC_Os03g22690
Os.11847.1.S1_at--688--2711Chr03:13080384..13080408 (25 bp)
AAGCTTGTGTGCCAGATCTCTTGAA
LOC_Os03g22690
Os.11847.1.S1_at--605--1271Chr03:13080329..13080353 (25 bp)
AGATACTGATGGGACCTTGCGTGCA
LOC_Os03g22690
Os.11847.1.S1_at--154--1291Chr03:13079594..13079618 (25 bp)
AGATCGCAAACCTCGTGGCAAGCAA
LOC_Os03g22690
Os.11847.1.S1_at--961--8691Chr03:13079506..13079530 (25 bp)
TGTCCGGCCATATACCTGACACTAT
LOC_Os03g22690
Os.11847.1.S1_at--952--5091Chr03:13079466..13079490 (25 bp)
GCACGCGGAAATGCTTTTCTGTGTT
LOC_Os03g22690
Os.11847.1.S1_at--915--3891Chr03:13079437..13079461 (25 bp)
CTGGTGATGTGCTTATGGTCCGAAC
LOC_Os03g22690
Os.11847.1.S1_at--1101--7771Chr03:13079421..13079445 (25 bp)
GGTCCGAACCGGAATGTTTCAGACT
LOC_Os03g22690
Os.11847.1.S1_at--1129--2271Chr03:13079231..13079255 (25 bp)
AAATGCACTGTTGCTTAGTTCGAGG
LOC_Os03g22690
Os.11847.1.S1_at--615--6551Chr03:13079205..13079229 (25 bp)
GATTATCTGCGGCTCTATTGTACTG
LOC_Os03g22690
Target Sequence 
TGTTCAGAAACTTGTCACCGCATGTTCAAGCTTGTGTGCCAGATCTCTTGAAGGTTGCTCTAAATTGTATGGACAATGTT
AGAGATACTGATGGGACCTTGCGTGCAGTCAAGTCAAAGATCGCAAACCTCGTGGCAAGCAACATGAGCAGGAACTGGCC
ACAGGATTTGTATCAGAAGGTGGCGCAGTGCATATGATGGGGATCTGTCCGGCCATATACCTGACACTATCAAAAGCTTC
CGAAAGCACGCGGAAATGCTTTTCTGTGTTTGTGCTGGTGATGTGCTTATGGTCCGAACCGGAATGTTTCAGACTGGTGG
ATGCAAATCCTTTTGATCACTCAGCTATATCAGCCAAAAGAGAACATATATGCCATGCCCGGGGGTCATCTGATGTGTAG
TGTGTGAAATGTGAAACTTAATGGCACCAATCAGAATCTGTATTATTAATCCATGGTTGTAAAGCAGTTTCTGAATATCC
AAATGCACTGTTGCTTAGTTCGAGGAGATTATCTGCGGCTCTATTGTACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11847.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis