Browse Element(s) Details


Os.49739.1.S2_at

Description gb:AK120281.1
DB_XREF= gi:37989904
TID=Os.49739.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49739 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-201-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049I08, full insert sequence.
FL= gb:AK059731.1 gb:AK120281.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2267011/11triacylglycerol Lipase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22634OsAffx.3297.1.S1_at11/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634Os.26852.1.A1_at11/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634OsAffx.6281.1.S1_at2/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634Os.12629.1.S2_at1/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22650NANA3+13057480..13058058hypothetical protein
LOC_Os03g22670Os.49739.1.S2_at11/113+13066237..13072596triacylglycerol Lipase, putative, expressed
LOC_Os03g22670Os.49739.1.S1_at10/113+13066237..13072596triacylglycerol Lipase, putative, expressed
LOC_Os03g22680Os.49023.1.S1_x_at11/113+13074632..13077118CHY zinc finger family protein, expressed
LOC_Os03g22680Os.53636.1.S1_at4/113+13074632..13077118CHY zinc finger family protein, expressed
LOC_Os03g22690Os.11847.1.S1_at11/113+13079157..13088173nucleoporin interacting component, putative, expressed
LOC_Os03g22690Os.32544.1.S1_at1/113+13079157..13088173nucleoporin interacting component, putative, expressed
LOC_Os03g22700Os.53969.1.S1_at11/113+13089745..13094569Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49739.1.S2_at--600--10151Chr03:13066936..13066960 (25 bp)
TATCATACATCATCGTTTCACCACC
LOC_Os03g22670
Os.49739.1.S2_at--269--10331Chr03:13066921..13066945 (25 bp)
TTTCACCACCCAAACAATGTTCTCA
LOC_Os03g22670
Os.49739.1.S2_at--974--3511Chr03:13066840..13066864 (25 bp)
CATGAAGTCGATGGCAGCACAGTCT
LOC_Os03g22670
Os.49739.1.S2_at--740--1491Chr03:13066825..13066849 (25 bp)
AGCACAGTCTACCAAGTCTGCGACG
LOC_Os03g22670
Os.49739.1.S2_at--271--5351Chr03:13066796..13066816 (21 bp)
GAAGATCCAGACTGCTCCAGGAGCG
LOC_Os03g22670
Os.49739.1.S2_at--346--1351Chr03:13066580..13066604 (25 bp)
AGACCACCTGACATACCTTGGAGTG
LOC_Os03g22670
Os.49739.1.S2_at--903--6211Chr03:13066549..13066573 (25 bp)
GAGGCCGACGACTGGAGCACCTGCA
LOC_Os03g22670
Os.49739.1.S2_at--1092--751Chr03:13066434..13066458 (25 bp)
ATGTCGTCGTCAGAGATCACGGTGT
LOC_Os03g22670
Os.49739.1.S2_at--164--6971Chr03:13066373..13066397 (25 bp)
GTAGCCGTACCGTATGTACTTGTGC
LOC_Os03g22670
Os.49739.1.S2_at--253--3311Chr03:13066325..13066349 (25 bp)
CACAACTCACTGATGGTATCTCTAT
LOC_Os03g22670
Os.49739.1.S2_at--1077--51Chr03:13066270..13066294 (25 bp)
ATTGCTTTCTTCTGTAATGCTGGTA
LOC_Os03g22670
Target Sequence 
TATCATACATCATCGTTTCACCACCCAAACAATGTTCTCACTTACGCATATATATCACCTATACATACGCACTAACTGAA
ATTTCAGGTCTGGGAACATGAAGTCGATGGCAGCACAGTCTACCAAGTCTGCGACGGCAGCGGCGAAGATCCAGACTGCT
CCAGGAGCGTGCTGGTGCTGTTCTGGAGCGCGTCAGACCACCTGACATACCTTGGAGTGGACATGGAGGCCGACGACTGG
AGCACCTGCAGGATCGTCCTGGGCAGGAGCGCCGCCGAGACGCTCCTGCTGCAGCACGCACGGCAACTCGCCGGCGGCGA
CGACGAGAGCGGCGGCGTCAATGTCGTCGTCAGAGATCACGGTGTGCAGGTTGTTGGTTCGGAGATAGCAGTTGCGGCTA
GGTAGCCGTACCGTATGTACTTGTGCAACTTGAAAGTGCGTTTTGTGAACACAACTCACTGATGGTATCTCTATATATAT
AGTTTTGGCTGTAAATTTTTAGATATTGCTTTCTTCTGTAATGCTGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49739.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis