Browse Element(s) Details


Os.26852.1.A1_at

Description gb:CB621144
DB_XREF= gi:29616132
DB_XREF=OSIIEa06N06.r
CLONE=OSIIEa06N06
TID=Os.26852.1
CNT=9
FEA=EST
TIER=Stack
STK=6
UG=Os.26852 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_197784.1 (A.thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2263411/11terpene synthase 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22610Os.20572.1.A1_at10/113+13010076..13014845Peptidyl-tRNA hydrolase, putative, expressed
LOC_Os03g22610OsAffx.27409.1.S1_x_at2/113+13010076..13014845Peptidyl-tRNA hydrolase, putative, expressed
LOC_Os03g22610Os.24682.1.A1_at1/113+13010076..13014845Peptidyl-tRNA hydrolase, putative, expressed
LOC_Os03g22620Os.20572.2.S1_at11/113+13014066..13024948Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g22620Os.52722.1.S1_at11/113+13014066..13024948Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g22634OsAffx.3297.1.S1_at11/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634Os.26852.1.A1_at11/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634OsAffx.6281.1.S1_at2/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634Os.12629.1.S2_at1/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22650NANA3+13057480..13058058hypothetical protein
LOC_Os03g22670Os.49739.1.S2_at11/113+13066237..13072596triacylglycerol Lipase, putative, expressed
LOC_Os03g22670Os.49739.1.S1_at10/113+13066237..13072596triacylglycerol Lipase, putative, expressed
LOC_Os03g22680Os.49023.1.S1_x_at11/113+13074632..13077118CHY zinc finger family protein, expressed
LOC_Os03g22680Os.53636.1.S1_at4/113+13074632..13077118CHY zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0016099biological_processmonoterpenoid biosynthesis
GO:0016106biological_processsesquiterpenoid biosynthesis
GO:0042408molecular_functionmyrcene/(E)-beta-ocimene synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26852.1.A1_at--559--9311Chr03:13042867..13042891 (25 bp)
TCTCCAGGAGGCAGAATGGTTCCAT
LOC_Os03g22634
Os.26852.1.A1_at--726--6691Chr03:13042849..13042873 (25 bp)
GTTCCATCATAACTACGTACCAAGT
LOC_Os03g22634
Os.26852.1.A1_at--87--6931Chr03:13042770..13042794 (25 bp)
GTATGTATACTTGTCGGCATGGGAA
LOC_Os03g22634
Os.26852.1.A1_at--923--2231Chr03:13042403..13042427 (25 bp)
AAATTGGATGTAGCCAGCTCCGTGG
LOC_Os03g22634
Os.26852.1.A1_at--1057--731Chr03:13042357..13042381 (25 bp)
ATGTTACCAGTGAGGTTGCCCTAGC
LOC_Os03g22634
Os.26852.1.A1_at--658--6151Chr03:13042346..13042370 (25 bp)
GAGGTTGCCCTAGCCAAGATAGGTT
LOC_Os03g22634
Os.26852.1.A1_at--300--2651Chr03:13042292..13042316 (25 bp)
AACCAAGCTCATATTGATCGCCGTG
LOC_Os03g22634
Os.26852.1.A1_at--24--6391Chr03:13042277..13042301 (25 bp)
GATCGCCGTGAACTGTTGCCATTTG
LOC_Os03g22634
Os.26852.1.A1_at--319--10691Chr03:13042262..13042286 (25 bp)
TTGCCATTTGTACATCGGGTCACCA
LOC_Os03g22634
Os.26852.1.A1_at--220--491Chr03:13042249..13042273 (25 bp)
ATCGGGTCACCAACCTATCAAGGAG
LOC_Os03g22634
Os.26852.1.A1_at--1004--831Chr03:13042160..13042184 (25 bp)
ATGGAGAGCCATTTTGTCAAACCTA
LOC_Os03g22634
Target Sequence 
TCTCCAGGAGGCAGAATGGTTCCATCATAACTACGTACCAAGTTTCAAAGAGCAAATAGAAGTGTCGGTGATGTNTGCAG
GTATTCAAGCACTAAGTGTATGTATACTTGTCGGCATGGGAAATATAGTAACCGAGGAGACACTTGAGTGGGCCATTGGC
AACAATGATGCCGTTAGGGCTGGCGGTGAGGTGGCACGTTTCATGGATGACATGGCTGCATTTAAGAATGGAAGGAACAA
ATTGGATGTAGCCAGCTCCGTGGAGTGCTACATCAAGGAGTACAATGTTACCAGTGAGGTTGCCCTAGCCAAGATAGGTT
NTTTGGTNGAAGATGCATGGAAAACCATAAACCAAGCTCATATTGATCGCCGTGAACTGTTGCCATTTGTACATCGGGTC
ACCAACCTATCAAGGAGCATGGNTATTTTGTTTNTTGACAAAAGAGATGCATACACATACAGTAAGGATTTCAAAAGGAC
GATGGAGAGCCATTTTGTCAAACCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26852.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis