Browse Element(s) Details


Os.12629.1.S2_at

Description gb:AK068661.1
DB_XREF= gi:32978678
TID=Os.12629.1
CNT=35
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12629 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013164G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013164G06, full insert sequence.
FL= gb:AK068403.1 gb:AK068661.1 gb:AK059212.1 gb:AK119691.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g226341/11terpene synthase 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22610Os.20572.1.A1_at10/113+13010076..13014845Peptidyl-tRNA hydrolase, putative, expressed
LOC_Os03g22610OsAffx.27409.1.S1_x_at2/113+13010076..13014845Peptidyl-tRNA hydrolase, putative, expressed
LOC_Os03g22610Os.24682.1.A1_at1/113+13010076..13014845Peptidyl-tRNA hydrolase, putative, expressed
LOC_Os03g22620Os.20572.2.S1_at11/113+13014066..13024948Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g22620Os.52722.1.S1_at11/113+13014066..13024948Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g22634OsAffx.3297.1.S1_at11/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634Os.26852.1.A1_at11/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634OsAffx.6281.1.S1_at2/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634Os.12629.1.S2_at1/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22650NANA3+13057480..13058058hypothetical protein
LOC_Os03g22670Os.49739.1.S2_at11/113+13066237..13072596triacylglycerol Lipase, putative, expressed
LOC_Os03g22670Os.49739.1.S1_at10/113+13066237..13072596triacylglycerol Lipase, putative, expressed
LOC_Os03g22680Os.49023.1.S1_x_at11/113+13074632..13077118CHY zinc finger family protein, expressed
LOC_Os03g22680Os.53636.1.S1_at4/113+13074632..13077118CHY zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0016099biological_processmonoterpenoid biosynthesis
GO:0016106biological_processsesquiterpenoid biosynthesis
GO:0042408molecular_functionmyrcene/(E)-beta-ocimene synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12629.1.S2_at--365--5911Chr01:26413474..26413498 (25 bp)
GAGCTCTAAGCTCACATAGCGGGAG
NONE
Os.12629.1.S2_at--1124--9992Chr02:33408667..33408687 (21 bp)
TAGCGGGAGAGGATTCTAATCCCTC
NONE
Os.12629.1.S2_at--672--6011Chr01:26413379..26413403 (25 bp)
GAGAGAATTCTAATCCCTTGAGGAG
NONE
Os.12629.1.S2_at--225--7051Chr01:26413264..26413288 (25 bp)
GTAACATCTATCATTCCGTCAAAGT
NONE
Os.12629.1.S2_at--389--7672Chr01:29919106..29919338 (25 bp)
GGGATATCTTCTCAAGAGTCTAAAA
NONE
Os.12629.1.S2_at--217--9831Chr01:26413110..26413134 (25 bp)
TAAAACACGTTTCCCTCACATAGCG
NONE
Os.12629.1.S2_at--935--9991Chr01:26413090..26413114 (25 bp)
TAGCGTCCTCACATTGATGCACCAT
NONE
Os.12629.1.S2_at--909--1731Chr01:26413070..26413094 (25 bp)
ACCATCTATTGGTGCATGAGAGGAA
NONE
Os.12629.1.S2_at--373--5311NONE
GAAGGGTAAGGATCTCGTTGTAATA
NONE
Os.12629.1.S2_at--1035--6731Chr01:26412998..26413022 (25 bp)
GTTCACTACGGTTATTAGGGCATGT
NONE
Os.12629.1.S2_at--989--2452Chr03:13048899..13048959 (25 bp)
AACAAGCTCTTTGTTACCATGCATG
LOC_Os03g22634
Target Sequence 
GAGCTCTAAGCTCACATAGCGGGAGAGGATTCTAATCCCTCGAGGGGGCAGGGGATGTTCCCCTCGTCTAACTTTTTCTC
TCAATTTTAATGTGTGAGAGAATTCTAATCCCTTGAGGAGGGGATGTCCCCCTCGTCTAAGTTTTTCTCTCAATTTCAAT
GTAAGTAGTTTTTGAAGAACTCTAAAAAAATATTGATAATGTAGAGTTTTGTAACATCTATCATTCCGTCAAAGTTGAGT
TTTGACTTCTTTTTTTCTTTTGAGAAGTTTATATATGTGTTGTGAATGTTGTCATTTTCTTGAGATTTTTTAACAATCAT
TTAGATAGTGCTTGAACAAAAGAGGGGATATCTTCTCAAGAGTCTAAAACACGTTTCCCTCACATAGCGTCCTCACATTG
ATGCACCATCTATTGGTGCATGAGAGGAAGAGAAGGGTAAGGATCTCGTTGTAATATCAACTCTGTGATGGTAATAGTTC
ACTACGGTTATTAGGGCATGTATAACAGTGTTTAGTAACAAGCTCTTTGTTACCATGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12629.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis