Browse Element(s) Details


OsAffx.6281.1.S1_at

Description tigr:9637.m01243
TID=OsAffx.6281.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1521011/11hypothetical protein
LOC_Os03g226342/11terpene synthase 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15170OsAffx.17709.1.S1_at11/119+9206276..9210731xanthine/uracil permease family protein, expressed
LOC_Os09g15170Os.23153.1.S1_s_at11/119+9206276..9210731xanthine/uracil permease family protein, expressed
LOC_Os09g15180OsAffx.14234.1.S1_at2/119+9214022..9218387transposon protein, putative, unclassified, expressed
LOC_Os09g15190OsAffx.17710.1.S1_at11/119+9219534..9220634hypothetical protein
LOC_Os09g15200OsAffx.17711.1.S1_at11/119+9227997..9230565hypothetical protein
LOC_Os09g15200OsAffx.14065.1.S1_at1/119+9227997..9230565hypothetical protein
LOC_Os09g15210OsAffx.6281.1.S1_at11/119+9232698..9233597hypothetical protein
LOC_Os09g15220Os.46012.2.S1_x_at10/119+9237164..9242848retrotransposon protein, putative, unclassified
LOC_Os09g15220Os.27088.1.A1_x_at6/119+9237164..9242848retrotransposon protein, putative, unclassified
LOC_Os09g15220Os.46012.3.S1_x_at6/119+9237164..9242848retrotransposon protein, putative, unclassified
LOC_Os09g15220Os.54691.1.S1_x_at1/119+9237164..9242848retrotransposon protein, putative, unclassified
LOC_Os09g15230Os.46808.1.S1_at11/119+9244914..9245867expressed protein
LOC_Os09g15230Os.46808.2.S1_x_at2/119+9244914..9245867expressed protein
LOC_Os09g15240OsAffx.17712.1.S1_at11/119+9250213..9254027Retinal pigment epithelial membrane protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0016099biological_processmonoterpenoid biosynthesis
GO:0016106biological_processsesquiterpenoid biosynthesis
GO:0042408molecular_functionmyrcene/(E)-beta-ocimene synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6281.1.S1_at--273--2031Chr09:9232953..9232977 (25 bp)
ACTACTCGTGAGATTTGGATTGTTT
LOC_Os09g15210
OsAffx.6281.1.S1_at--134--7931Chr09:9232969..9232993 (25 bp)
GGATTGTTTTACCTAACTTTCATCA
LOC_Os09g15210
OsAffx.6281.1.S1_at--292--2252Chr09:9233381..9233405 (25 bp)
AAATTCTACCGCTCTTGCTTCTATA
LOC_Os09g15210
OsAffx.6281.1.S1_at--926--1791Chr09:9233388..9233412 (25 bp)
ACCGCTCTTGCTTCTATAAATGTCA
LOC_Os09g15210
OsAffx.6281.1.S1_at--277--10151Chr09:9233413..9233437 (25 bp)
TATCCGATGATCAACACGAGCAACT
LOC_Os09g15210
OsAffx.6281.1.S1_at--462--10871Chr09:9233448..9233472 (25 bp)
TTGGCTTTGGCTATTGTTGGTATTT
LOC_Os09g15210
OsAffx.6281.1.S1_at--130--6631Chr09:9233463..9233487 (25 bp)
GTTGGTATTTATTACGAGCACAAAA
LOC_Os09g15210
OsAffx.6281.1.S1_at--758--9531Chr09:9233491..9233515 (25 bp)
TCTACAGGCGCACATATACCGTTGT
LOC_Os09g15210
OsAffx.6281.1.S1_at--812--236Chr10:8308708..8308730 (22 bp)
ATATACCGTTGTAGCTTTCACCCAA
NONE
OsAffx.6281.1.S1_at--499--1551Chr09:9233516..9233540 (25 bp)
AGCTTTCACCCAACAGTATTCCAGG
LOC_Os09g15210
OsAffx.6281.1.S1_at--724--6872Chr09:9233531..9233555 (25 bp)
GTATTCCAGGGTATTGTATCCACAG
LOC_Os09g15210
Target Sequence 
ACTACTCGTGAGATTTGGATTGTTTTACCTAACTTTCATCAAGGTACTTCAAATATCAAGGAACTTCATAAAGATCTTTT
CAAAAATGATTACATAAAATTTGCGATGAAACCTGGTGAGACTTTGGATGATTATCTTGCTAGATTTAACAAAGTTTTGA
GTAATCTTAAATCTATTGATACATCTTATGATACTAATTACTCACAATATGAGATGAAAGTTATATCTATTCAGGAGTCT
ATTGATATGTCTACTTTGATTTTAGATTCACTTTACACTAAACTTAAAACCCATGAGAGGAATATTCTTTTTTGTAAAGT
TGACTTTAAATCTAGTGTTTTGGTTTCTCCTTCGACTTCCTTGGATATTGGTGCTTCTTCGTCAAATTCTACCGCTCTTG
CTTCTATAAATGTCATATCCGATGATCAACACGAGCAACTCGAGGAGGACTTGGCTTTGGCTATTGTTGGTATTTATTAC
GAGCACAAAATAATCTACAGGCGCACATATACCGTTGTAGCTTTCACCCAACAGTATTCCAGGGTATTGTATCCACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6281.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis