Browse Element(s) Details


Os.23153.1.S1_s_at

Description gb:BX901415
DB_XREF= gi:40491240
DB_XREF=BX901415
CLONE=p588c01p5
TID=Os.23153.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.23153 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_180966.1 (A.thaliana) putative membrane transporter (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1517011/11xanthine/uracil permease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15130OsAffx.22722.1.S1_at2/119+9179360..9181566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15130OsAffx.22722.1.S1_x_at1/119+9179360..9181566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15140OsAffx.20628.1.S1_at5/119+9182378..9185302retrotransposon protein, putative, unclassified
LOC_Os09g15140OsAffx.10496.1.S1_at1/119+9182378..9185302retrotransposon protein, putative, unclassified
LOC_Os09g15140OsAffx.15396.1.S1_x_at1/119+9182378..9185302retrotransposon protein, putative, unclassified
LOC_Os09g15150NANA9+9197451..9197767hypothetical protein
LOC_Os09g15160NANA9+9201209..9203452retrotransposon protein, putative, unclassified
LOC_Os09g15170OsAffx.17709.1.S1_at11/119+9206276..9210731xanthine/uracil permease family protein, expressed
LOC_Os09g15170Os.23153.1.S1_s_at11/119+9206276..9210731xanthine/uracil permease family protein, expressed
LOC_Os09g15180OsAffx.14234.1.S1_at2/119+9214022..9218387transposon protein, putative, unclassified, expressed
LOC_Os09g15190OsAffx.17710.1.S1_at11/119+9219534..9220634hypothetical protein
LOC_Os09g15200OsAffx.17711.1.S1_at11/119+9227997..9230565hypothetical protein
LOC_Os09g15200OsAffx.14065.1.S1_at1/119+9227997..9230565hypothetical protein
LOC_Os09g15210OsAffx.6281.1.S1_at11/119+9232698..9233597hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0015646molecular_functionpermease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23153.1.S1_s_at--177--9611Chr09:9210234..9210258 (25 bp)
TCATCATGGCGGTTCTCCTTGACAA
LOC_Os09g15170
Os.23153.1.S1_s_at--237--10591Chr09:9210246..9210270 (25 bp)
TTCTCCTTGACAACACACTCGATGT
LOC_Os09g15170
Os.23153.1.S1_s_at--461--3311Chr09:9210259..9210283 (25 bp)
CACACTCGATGTCAGAGAGGCGGCA
LOC_Os09g15170
Os.23153.1.S1_s_at--954--9731Chr09:9210372..9210396 (25 bp)
TCAATAGGTTCTTCCCACCATCTTG
LOC_Os09g15170
Os.23153.1.S1_s_at--291--10651Chr09:9210383..9210407 (25 bp)
TTCCCACCATCTTGAGCAGAGCAGA
LOC_Os09g15170
Os.23153.1.S1_s_at--870--5891Chr09:9210411..9210435 (25 bp)
GAGCTGCCGAAATTCAGAGAATGCA
LOC_Os09g15170
Os.23153.1.S1_s_at--126--2351Chr09:9210435..9210459 (25 bp)
AAAGACAAAGTTCCAGATGCACCAA
LOC_Os09g15170
Os.23153.1.S1_s_at--799--9011Chr09:9210452..9210476 (25 bp)
TGCACCAAGCAGTGAAATGTAGTCT
LOC_Os09g15170
Os.23153.1.S1_s_at--457--9571Chr09:9210549..9210573 (25 bp)
TCTTCTAGCTGTCCACTTGTACATA
LOC_Os09g15170
Os.23153.1.S1_s_at--1067--10371Chr09:9210591..9210615 (25 bp)
TTTTCATCAGCTTCAACACCGAGGA
LOC_Os09g15170
Os.23153.1.S1_s_at--1028--3351Chr09:9210607..9210631 (25 bp)
CACCGAGGATGTTTGATTTTGCTGT
LOC_Os09g15170
Target Sequence 
TCATCATGGCGGTTCTCCTTGACAACACACTCGATGTCAGAGAGGCGGCAAGGGACCGGGGAATGCCATGGTGGGCGCGA
TTCAGGACGTTCCNGAGNGCGACAGCAGNGAATGAAGAGTTCTACACCCTGNCATTCAANCTCAATAGGTTCTTCCCACC
ATCTTGAGCAGAGCAGAGCAGAGCTGCCGAAATTCAGAGAATGCAAAGACAAAGTTCCAGATGCACCAAGCAGTGAAATG
TAGTCTGCTTTTGNTAGGGTNGNANACAGANANGTTGAGCTGACAAANATGAGCAATTTTACCAGCNANGCAAGGAGNAA
CTCTCTTCTAGCTGTCCACTTGTACATAGNANACGATTCGTTTNTCTTTTCATCAGCTTCAACACCGAGGATGTTTGATT
TTGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23153.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis