Browse Element(s) Details


OsAffx.14065.1.S1_at

Description tigr:9632.m02966
TID=OsAffx.14065.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g312009/11hypothetical protein
LOC_Os09g152001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31180OsAffx.29169.1.S1_at7/114+18467302..18471613retrotransposon protein, putative, unclassified
LOC_Os04g31180OsAffx.29169.3.S1_at4/114+18467302..18471613retrotransposon protein, putative, unclassified
LOC_Os04g31190Os.27352.1.S1_at10/114+18472087..18482536Dynamin-related protein 3A, putative, expressed
LOC_Os04g31200OsAffx.14065.1.S1_at9/114+18484783..18485961hypothetical protein
LOC_Os04g31210Os.5633.1.S1_at11/114+18488545..18493689Sodium Bile acid symporter family protein, expressed
LOC_Os04g31210Os.5633.2.S1_at11/114+18488545..18493689Sodium Bile acid symporter family protein, expressed
LOC_Os04g31210Os.5633.2.S1_x_at11/114+18488545..18493689Sodium Bile acid symporter family protein, expressed
LOC_Os04g31220OsAffx.19542.3.S1_x_at10/114+18495808..18500030retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g31230OsAffx.26267.1.S1_at11/114+18502172..18503090hypothetical protein
LOC_Os04g31240Os.10063.2.S1_at10/114+18503261..18507358esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os04g31240Os.27780.2.S1_a_at1/114+18503261..18507358esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os04g31250Os.57209.1.S1_at11/114+18508482..18509053Gamma-thionins family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14065.1.S1_at--72--10255Chr12:22319262..22319283 (22 bp)
TTTGGAACTCGGACGGTCGCGTGTC
NONE
OsAffx.14065.1.S1_at--239--5751NONE
GACGGTCGCGTGTCGGGTATTCTTC
NONE
OsAffx.14065.1.S1_at--668--7431Chr04:18485502..18485526 (25 bp)
GTGTCGGGTATTCTTCACCGTGCAC
LOC_Os04g31200
OsAffx.14065.1.S1_at--84--7691Chr04:18485497..18485521 (25 bp)
GGGTATTCTTCACCGTGCACCGACT
LOC_Os04g31200
OsAffx.14065.1.S1_at--517--9031Chr04:18485482..18485506 (25 bp)
TGCACCGACTGCCACTTGATGAGTT
LOC_Os04g31200
OsAffx.14065.1.S1_at--871--5711Chr04:18485476..18485500 (25 bp)
GACTGCCACTTGATGAGTTCCTTCA
LOC_Os04g31200
OsAffx.14065.1.S1_at--1027--3311Chr04:18485470..18485494 (25 bp)
CACTTGATGAGTTCCTTCACTGGGT
LOC_Os04g31200
OsAffx.14065.1.S1_at--1032--691Chr04:18485464..18485488 (25 bp)
ATGAGTTCCTTCACTGGGTGCACGC
LOC_Os04g31200
OsAffx.14065.1.S1_at--565--8631Chr04:18485450..18485474 (25 bp)
TGGGTGCACGCCATCTTCTACCATA
LOC_Os04g31200
OsAffx.14065.1.S1_at--677--3551Chr04:18485442..18485463 (22 bp)
CATCTTCTACCATATCGCGCAGATA
LOC_Os04g31200
OsAffx.14065.1.S1_at--1049--4311NONE
CCATATCGCGCAGATAAGAGCTCCA
NONE
Target Sequence 
TTTGGAACTCGGACGGTCGCGTGTCGGGTATTCTTCACCGTGCACCGACTGCCACTTGATGAGTTCCTTCACTGGGTGCA
CGCCATCTTCTACCATATCGCGCAGATAAGAGCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14065.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis