Browse Element(s) Details


OsAffx.26267.1.S1_at

Description tigr:9632.m02970
TID=OsAffx.26267.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3123011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31190Os.27352.1.S1_at10/114+18472087..18482536Dynamin-related protein 3A, putative, expressed
LOC_Os04g31200OsAffx.14065.1.S1_at9/114+18484783..18485961hypothetical protein
LOC_Os04g31210Os.5633.1.S1_at11/114+18488545..18493689Sodium Bile acid symporter family protein, expressed
LOC_Os04g31210Os.5633.2.S1_at11/114+18488545..18493689Sodium Bile acid symporter family protein, expressed
LOC_Os04g31210Os.5633.2.S1_x_at11/114+18488545..18493689Sodium Bile acid symporter family protein, expressed
LOC_Os04g31220OsAffx.19542.3.S1_x_at10/114+18495808..18500030retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g31230OsAffx.26267.1.S1_at11/114+18502172..18503090hypothetical protein
LOC_Os04g31240Os.10063.2.S1_at10/114+18503261..18507358esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os04g31240Os.27780.2.S1_a_at1/114+18503261..18507358esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os04g31250Os.57209.1.S1_at11/114+18508482..18509053Gamma-thionins family protein, expressed
LOC_Os04g31260NANA4+18512349..18513349hypothetical protein
LOC_Os04g31270OsAffx.14067.1.S1_at11/114+18515321..18520273ribosome-associated GTPase YjeQ family protein, expressed
LOC_Os04g31270Os.18054.1.S1_s_at11/114+18515321..18520273ribosome-associated GTPase YjeQ family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26267.1.S1_at--876--1132Chr04:18502355..18502379 (25 bp)
AGTGCGCGCGAGAAAAGAGCACCGC
LOC_Os04g31230
OsAffx.26267.1.S1_at--255--611Chr04:18502394..18502418 (25 bp)
ATGCGGGTGCGCAGAGACCATGCCT
LOC_Os04g31230
OsAffx.26267.1.S1_at--1042--4091Chr04:18502525..18502549 (25 bp)
CGACGGCCTTGCTGCGACGCAGGCA
LOC_Os04g31230
OsAffx.26267.1.S1_at--545--3832Chr04:18502572..18502596 (25 bp)
CTGCTCGGCTAGGTAGTGCACTGGC
LOC_Os04g31230
OsAffx.26267.1.S1_at--381--8692Chr04:18502621..18502645 (25 bp)
TGTGCAGCAGCTTGCGGCAACTCGT
LOC_Os04g31230
OsAffx.26267.1.S1_at--842--7332Chr04:18502699..18502723 (25 bp)
GTGCAGTGCCGTGCAAGGCACAGCC
LOC_Os04g31230
OsAffx.26267.1.S1_at--762--2932Chr04:18502713..18502737 (25 bp)
AAGGCACAGCCGATGGGCAGCAGTT
LOC_Os04g31230
OsAffx.26267.1.S1_at--246--5052Chr04:18502729..18502753 (25 bp)
GCAGCAGTTCTTCGTCGTCATGTGG
LOC_Os04g31230
OsAffx.26267.1.S1_at--181--792Chr04:18502748..18502772 (25 bp)
ATGTGGCCCGCCCAAAGTTGTGTCT
LOC_Os04g31230
OsAffx.26267.1.S1_at--259--1252Chr04:18502763..18502787 (25 bp)
AGTTGTGTCTGCTCCGTTCATGCAA
LOC_Os04g31230
OsAffx.26267.1.S1_at--874--10512Chr04:18502779..18502803 (25 bp)
TTCATGCAACGGAGACGAACCGCGT
LOC_Os04g31230
Target Sequence 
AGTGCGCGCGAGAAAAGAGCACCGCGGCCGGGCGGCACGATGCGGGTGCGCAGAGACCATGCCTGGGTGAGGAGGGGGTT
GCCGGCGCTGGATTCGGGTGCAGGCACGGCCGACTACGGGCCCGTGCGCGGCGTGGTGCGGAAGCGGCGCGATTGCGGTG
TGGCTGGCGACGACGGCCTTGCTGCGACGCAGGCACGGTGGTCGGCGTCATGCGGGGCTGCTCGGCTAGGTAGTGCACTG
GCCGTGCGAGATGGCGCCGCGCCGGGTGTGCAGCAGCTTGCGGCAACTCGTGGCCGCGATGGGGCGCGTGGGTGCAGGCA
GCGGCTAGCGGCCAGCAGCTCGCGGTGCAGTGCCGTGCAAGGCACAGCCGATGGGCAGCAGTTCTTCGTCGTCATGTGGC
CCGCCCAAAGTTGTGTCTGCTCCGTTCATGCAACGGAGACGAACCGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis