Browse Element(s) Details


Os.5633.1.S1_at

Description gb:AK121764.1
DB_XREF= gi:37991387
TID=Os.5633.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5633 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-011-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033090P03, full insert sequence.
FL= gb:AK121764.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3121011/11Sodium Bile acid symporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31180OsAffx.29169.1.S1_at7/114+18467302..18471613retrotransposon protein, putative, unclassified
LOC_Os04g31180OsAffx.29169.3.S1_at4/114+18467302..18471613retrotransposon protein, putative, unclassified
LOC_Os04g31190Os.27352.1.S1_at10/114+18472087..18482536Dynamin-related protein 3A, putative, expressed
LOC_Os04g31200OsAffx.14065.1.S1_at9/114+18484783..18485961hypothetical protein
LOC_Os04g31210Os.5633.1.S1_at11/114+18488545..18493689Sodium Bile acid symporter family protein, expressed
LOC_Os04g31210Os.5633.2.S1_at11/114+18488545..18493689Sodium Bile acid symporter family protein, expressed
LOC_Os04g31210Os.5633.2.S1_x_at11/114+18488545..18493689Sodium Bile acid symporter family protein, expressed
LOC_Os04g31220OsAffx.19542.3.S1_x_at10/114+18495808..18500030retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g31230OsAffx.26267.1.S1_at11/114+18502172..18503090hypothetical protein
LOC_Os04g31240Os.10063.2.S1_at10/114+18503261..18507358esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os04g31240Os.27780.2.S1_a_at1/114+18503261..18507358esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os04g31250Os.57209.1.S1_at11/114+18508482..18509053Gamma-thionins family protein, expressed
LOC_Os04g31260NANA4+18512349..18513349hypothetical protein
LOC_Os04g31270OsAffx.14067.1.S1_at11/114+18515321..18520273ribosome-associated GTPase YjeQ family protein, expressed
LOC_Os04g31270Os.18054.1.S1_s_at11/114+18515321..18520273ribosome-associated GTPase YjeQ family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006814biological_processsodium ion transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0008508molecular_functionbile acid:sodium symporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5633.1.S1_at--65--651Chr04:18492369..18492393 (25 bp)
ATGCATCTGGCTTTTTCTTTGGTTA
LOC_Os04g31210
Os.5633.1.S1_at--754--10391Chr04:18493227..18493251 (25 bp)
TTTTGGAAATCCTCTCACAGCAGTT
LOC_Os04g31210
Os.5633.1.S1_at--1030--1631Chr04:18493267..18493291 (25 bp)
AGCGTCTGCCATTCGGTGTATGGTA
LOC_Os04g31210
Os.5633.1.S1_at--29--1091Chr04:18493334..18493358 (25 bp)
AGGGCCAGTAATGCGTCCTTGACCA
LOC_Os04g31210
Os.5633.1.S1_at--444--6031Chr04:18493360..18493384 (25 bp)
GAGATGTCAAGCTGTTATGCCACCA
LOC_Os04g31210
Os.5633.1.S1_at--966--6551Chr04:18493436..18493460 (25 bp)
GATTAGCGTCCAGCTTGAACCAGAT
LOC_Os04g31210
Os.5633.1.S1_at--245--4911Chr04:18493486..18493510 (25 bp)
GCTTCAGTAAGCACCATGTCTTCAT
LOC_Os04g31210
Os.5633.1.S1_at--15--771Chr04:18493501..18493525 (25 bp)
ATGTCTTCATGTTTAGCGTCCAGCT
LOC_Os04g31210
Os.5633.1.S1_at--92--291Chr04:18493534..18493558 (25 bp)
ATAGGTCTTCATTTATCTCGATCAT
LOC_Os04g31210
Os.5633.1.S1_at--1052--8971Chr04:18493574..18493598 (25 bp)
TGAACTTGGGCATATTCCTGCGCAT
LOC_Os04g31210
Os.5633.1.S1_at--1072--9251Chr04:18493589..18493613 (25 bp)
TCCTGCGCATGGTTGCCTTAAACAG
LOC_Os04g31210
Target Sequence 
ATGCATCTGGCTTTTTCTTTGGTTATGTTCTTTCTAGAACGATTGGCATCGATATCTNTTCATCACGAACAATCTCTATT
GAGGTTGGCATGCAGAATTCGGTGCTGGGTGTAGTTCTTGCGAGCAAGCATTTTGGAAATCCTCTCACAGCAGTTCCCTG
TGCTGTTTCTAGCGTCTGCCATTCGGTGTATGGTAGCCTTTTAGCTGGAATCTGGAGGTCTTTGCCCCCAAATGACAAGG
GCCAGTAATGCGTCCTTGACCATGAGATGTCAAGCTGTTATGCCACCAGCAGAAGCCCTCTTAGTCTGCCATCTGCTGCA
ATAAACACCATGCTTTCATGATTAGCGTCCAGCTTGAACCAGATAGGTGTTGTATTTATTTTTCAATCTGCTTCAGTAAG
CACCATGTCTTCATGTTTAGCGTCCAGCTTGAACCAGATAGGTCTTCATTTATCTCGATCATTTTGCATTCAAATCTTGA
ACTTGGGCATATTCCTGCGCATGGTTGCCTTAAACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5633.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis