Browse Element(s) Details


Os.10063.2.S1_at

Description gb:AK107340.1
DB_XREF= gi:32992549
TID=Os.10063.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10063 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-G02, full insert sequence.
FL= gb:AK107340.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3124010/11esterase/lipase/thioesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31190Os.27352.1.S1_at10/114+18472087..18482536Dynamin-related protein 3A, putative, expressed
LOC_Os04g31200OsAffx.14065.1.S1_at9/114+18484783..18485961hypothetical protein
LOC_Os04g31210Os.5633.1.S1_at11/114+18488545..18493689Sodium Bile acid symporter family protein, expressed
LOC_Os04g31210Os.5633.2.S1_at11/114+18488545..18493689Sodium Bile acid symporter family protein, expressed
LOC_Os04g31210Os.5633.2.S1_x_at11/114+18488545..18493689Sodium Bile acid symporter family protein, expressed
LOC_Os04g31220OsAffx.19542.3.S1_x_at10/114+18495808..18500030retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g31230OsAffx.26267.1.S1_at11/114+18502172..18503090hypothetical protein
LOC_Os04g31240Os.10063.2.S1_at10/114+18503261..18507358esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os04g31240Os.27780.2.S1_a_at1/114+18503261..18507358esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os04g31250Os.57209.1.S1_at11/114+18508482..18509053Gamma-thionins family protein, expressed
LOC_Os04g31260NANA4+18512349..18513349hypothetical protein
LOC_Os04g31270OsAffx.14067.1.S1_at11/114+18515321..18520273ribosome-associated GTPase YjeQ family protein, expressed
LOC_Os04g31270Os.18054.1.S1_s_at11/114+18515321..18520273ribosome-associated GTPase YjeQ family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10063.2.S1_at--316--6511Chr04:18506062..18506086 (25 bp)
GATTTGCAAATTCGTTGTCCCTCTG
LOC_Os04g31240
Os.10063.2.S1_at--1016--2911Chr04:18506088..18506112 (25 bp)
AAGGAAACATTTTTCTCGCCAGAGA
LOC_Os04g31240
Os.10063.2.S1_at--941--5271Chr04:18506717..18506741 (25 bp)
GAAGGACAGCTCAAAGTTACCACTA
LOC_Os04g31240
Os.10063.2.S1_at--997--10691Chr04:18506769..18506793 (25 bp)
TTGCCTGTAGCTTCTGTGCCAAATA
LOC_Os04g31240
Os.10063.2.S1_at--979--2111Chr04:18506796..18506820 (25 bp)
ACAGTAAACATCCTCGTTGTGGGCG
LOC_Os04g31240
Os.10063.2.S1_at--1025--4551Chr04:18506818..18506841 (24 bp)
GCGCCAGCAGTGACTTCATTGTTGA
LOC_Os04g31240
Os.10063.2.S1_at--466--9151NONE
TGCGCAACCAGTCTGCATCGAAGGG
NONE
Os.10063.2.S1_at--879--8851Chr04:18507055..18507079 (25 bp)
TGATGCTTGATTGCTCGTGGGATAA
LOC_Os04g31240
Os.10063.2.S1_at--816--3891Chr04:18507085..18507109 (25 bp)
CTGGGATTATCTTGTCATGGCTGGA
LOC_Os04g31240
Os.10063.2.S1_at--413--171Chr04:18507160..18507184 (25 bp)
ATTTTGTAGCCCTTGTTCATTTTCA
LOC_Os04g31240
Os.10063.2.S1_at--350--3431Chr04:18507209..18507233 (25 bp)
CAGTTTAGTTAGTGCTCTTCAGTTT
LOC_Os04g31240
Target Sequence 
GATTTGCAAATTCGTTGTCCCTCTGTAAGGAAACATTTTTCTCGCCAGAGATGGATGATGACCTGGTCCAAAGGTACCAA
GGGCTAATGAAGGACAGCTCAAAGTTACCACTATTTGACCTAAGGAAGCTCAATGCATCATTGCCTGTAGCTTCTGTGCC
AAATAATACAGTAAACATCCTCGTTGTGGGCGCCAGCAGTGACTTCATTGTTGATGCTGAAGGGCTTTCAGAAACTGCAA
GATTTTATAATGCGCAACCAGTCTGCATCGAAGGGATAGCCCATGATATGATGCTTGATTGCTCGTGGGATAAAGGAGCT
GGGATTATCTTGTCATGGCTGGAGAAACTTACACCAAGATAAATCTTTTGTATTTTTTAAGACCTGTTTCTACATTTTGT
AGCCCTTGTTCATTTTCAAATGTAGAATCTTTGGTTGATAGGCAGTTTAGTTAGTGCTCTTCAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10063.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis