Browse Element(s) Details


OsAffx.17710.1.S1_at

Description tigr:9637.m01241
TID=OsAffx.17710.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1519011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15150NANA9+9197451..9197767hypothetical protein
LOC_Os09g15160NANA9+9201209..9203452retrotransposon protein, putative, unclassified
LOC_Os09g15170OsAffx.17709.1.S1_at11/119+9206276..9210731xanthine/uracil permease family protein, expressed
LOC_Os09g15170Os.23153.1.S1_s_at11/119+9206276..9210731xanthine/uracil permease family protein, expressed
LOC_Os09g15180OsAffx.14234.1.S1_at2/119+9214022..9218387transposon protein, putative, unclassified, expressed
LOC_Os09g15190OsAffx.17710.1.S1_at11/119+9219534..9220634hypothetical protein
LOC_Os09g15200OsAffx.17711.1.S1_at11/119+9227997..9230565hypothetical protein
LOC_Os09g15200OsAffx.14065.1.S1_at1/119+9227997..9230565hypothetical protein
LOC_Os09g15210OsAffx.6281.1.S1_at11/119+9232698..9233597hypothetical protein
LOC_Os09g15220Os.46012.2.S1_x_at10/119+9237164..9242848retrotransposon protein, putative, unclassified
LOC_Os09g15220Os.27088.1.A1_x_at6/119+9237164..9242848retrotransposon protein, putative, unclassified
LOC_Os09g15220Os.46012.3.S1_x_at6/119+9237164..9242848retrotransposon protein, putative, unclassified
LOC_Os09g15220Os.54691.1.S1_x_at1/119+9237164..9242848retrotransposon protein, putative, unclassified
LOC_Os09g15230Os.46808.1.S1_at11/119+9244914..9245867expressed protein
LOC_Os09g15230Os.46808.2.S1_x_at2/119+9244914..9245867expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17710.1.S1_at--311--6411Chr09:9219648..9219902 (25 bp)
GATCTGATGAGGGAGCTCCGACCAC
LOC_Os09g15190
OsAffx.17710.1.S1_at--107--4791Chr09:9219892..9219916 (25 bp)
GCTCCGACCACAGATCCAATTGAAG
LOC_Os09g15190
OsAffx.17710.1.S1_at--79--951Chr09:9219927..9219951 (25 bp)
AGGAATCTCTGCGACTGATCAGCAA
LOC_Os09g15190
OsAffx.17710.1.S1_at--861--2651Chr09:9219950..9220065 (25 bp)
AAGCCTCTGCCAGGCGTATGTGGAG
LOC_Os09g15190
OsAffx.17710.1.S1_at--718--7511Chr09:9220218..9220242 (25 bp)
GTGGATGACCAGGAGCTCCTAGCAA
LOC_Os09g15190
OsAffx.17710.1.S1_at--1111--3191Chr09:9220253..9220277 (25 bp)
CAAGGTCGGTGAGACGGCTTTGCAC
LOC_Os09g15190
OsAffx.17710.1.S1_at--585--2151Chr09:9220297..9220321 (25 bp)
ACAGCAAAGTGGTGGAGGTCCTCAT
LOC_Os09g15190
OsAffx.17710.1.S1_at--885--10571Chr09:9220381..9220405 (25 bp)
TTGCCGTTTCGTTGGGACGCTTCGA
LOC_Os09g15190
OsAffx.17710.1.S1_at--579--3631Chr09:9220400..9220424 (25 bp)
CTTCGAGATTGCGTGGGATCTGCTT
LOC_Os09g15190
OsAffx.17710.1.S1_at--571--8151Chr09:9220438..9220462 (25 bp)
GGAAATTATCTTACTCCGGACCAGA
LOC_Os09g15190
OsAffx.17710.1.S1_at--744--5271Chr09:9220469..9220493 (25 bp)
GAATGTCTTGCACGTCGCAGTACAA
LOC_Os09g15190
Target Sequence 
GATCTGATGAGGGAGCTCCGACCACAGATCCAATTGAAGATCAGGCTGAAGGAATCTCTGCGACTGATCAGCAAGCCTCT
GCCAGGCGTATGTGGAGTGTGCGCGGATGGTGTACGACCAGGCGAGGCACCTACTCGGCGCGGCCAACAACAACGGCGAC
ACGCCCCTGCACTGCGCCGCTGCAGCTGGGAACCACTCCTCGCGCTGGCTGCTGCTGCGCCTGCGCGTGACAGCAGCGGT
GCAGCGAGGGTGGATGACCAGGAGCTCCTAGCAAGGAGGAAGAACAAGGTCGGTGAGACGGCTTTGCACGGGGCGGTCCG
TGCTGGCCACAGCAAAGTGGTGGAGGTCCTCATGAAGGAGGATCCGGGACTGGCCGGCGTTGATCGGCACGACGGCACGT
CACCGCTGTACCTTGCCGTTTCGTTGGGACGCTTCGAGATTGCGTGGGATCTGCTTGATATGAGCTCTAGGAAATTATCT
TACTCCGGACCAGATGGTCAGAATGTCTTGCACGTCGCAGTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17710.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis