Browse Element(s) Details


OsAffx.17709.1.S1_at

Description tigr:9637.m01239
TID=OsAffx.17709.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Xanthineuracil permeases family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1517011/11xanthine/uracil permease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15130OsAffx.22722.1.S1_at2/119+9179360..9181566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15130OsAffx.22722.1.S1_x_at1/119+9179360..9181566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15140OsAffx.20628.1.S1_at5/119+9182378..9185302retrotransposon protein, putative, unclassified
LOC_Os09g15140OsAffx.10496.1.S1_at1/119+9182378..9185302retrotransposon protein, putative, unclassified
LOC_Os09g15140OsAffx.15396.1.S1_x_at1/119+9182378..9185302retrotransposon protein, putative, unclassified
LOC_Os09g15150NANA9+9197451..9197767hypothetical protein
LOC_Os09g15160NANA9+9201209..9203452retrotransposon protein, putative, unclassified
LOC_Os09g15170OsAffx.17709.1.S1_at11/119+9206276..9210731xanthine/uracil permease family protein, expressed
LOC_Os09g15170Os.23153.1.S1_s_at11/119+9206276..9210731xanthine/uracil permease family protein, expressed
LOC_Os09g15180OsAffx.14234.1.S1_at2/119+9214022..9218387transposon protein, putative, unclassified, expressed
LOC_Os09g15190OsAffx.17710.1.S1_at11/119+9219534..9220634hypothetical protein
LOC_Os09g15200OsAffx.17711.1.S1_at11/119+9227997..9230565hypothetical protein
LOC_Os09g15200OsAffx.14065.1.S1_at1/119+9227997..9230565hypothetical protein
LOC_Os09g15210OsAffx.6281.1.S1_at11/119+9232698..9233597hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0015646molecular_functionpermease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17709.1.S1_at--593--3611Chr09:9209730..9209754 (25 bp)
CTTGGCTTATCAATACCAGAGTACT
LOC_Os09g15170
OsAffx.17709.1.S1_at--691--9731Chr09:9209739..9209763 (25 bp)
TCAATACCAGAGTACTTTTCTCGGT
LOC_Os09g15170
OsAffx.17709.1.S1_at--789--1331Chr09:9209747..9209771 (25 bp)
AGAGTACTTTTCTCGGTATACCACG
LOC_Os09g15170
OsAffx.17709.1.S1_at--555--2031Chr09:9209752..9209776 (25 bp)
ACTTTTCTCGGTATACCACGAGCGC
LOC_Os09g15170
OsAffx.17709.1.S1_at--996--7851Chr09:9209761..9209785 (25 bp)
GGTATACCACGAGCGCACAACAAGG
LOC_Os09g15170
OsAffx.17709.1.S1_at--61--1711Chr09:9209766..9209790 (25 bp)
ACCACGAGCGCACAACAAGGACCAG
LOC_Os09g15170
OsAffx.17709.1.S1_at--666--10051Chr09:9210471..9210495 (25 bp)
TAGTCTGCTTTTGATAGGGTAGAAC
LOC_Os09g15170
OsAffx.17709.1.S1_at--272--5491Chr09:9210492..9210516 (25 bp)
GAACAGAAAGTTGAGCTGACAAAAT
LOC_Os09g15170
OsAffx.17709.1.S1_at--503--1711Chr09:9210527..9210551 (25 bp)
ACCAGCAGGCAAGGAGGAACTCTCT
LOC_Os09g15170
OsAffx.17709.1.S1_at--735--1531Chr09:9210530..9210554 (25 bp)
AGCAGGCAAGGAGGAACTCTCTTCT
LOC_Os09g15170
OsAffx.17709.1.S1_at--686--3611Chr09:9210564..9210588 (25 bp)
CTTGTACATAGAAACGATTCGTTTT
LOC_Os09g15170
Target Sequence 
CTTGGCTTATCAATACCAGAGTACTTTTCTCGGTATACCACGAGCGCACAACAAGGACCAGCGCACACTAAGGCTGGATG
GTTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCGCCCTCATCATGGCGGTTCTCCTTGACAACACAC
TCGATGTCAGAGAGGCGGCAAGGGACCGGGGAATGCCATGGTGGGCGCGATTCAGGACGTTCCGAGGCGACAGCAGGAAT
GAAGAGTTCTACACCCTGCCATTCAACCTCAATAGGTTCTTCCCACCATCTTGAGCAGAGCAGAGCAGAGCTGCCGAAAT
TCAGAGAATGCAAAGACAAAGTTCCAGATGCACCAAGCAGTGAAATGTAGTCTGCTTTTGATAGGGTAGAACAGAAAGTT
GAGCTGACAAAATGAGCAATTTTACCAGCAGGCAAGGAGGAACTCTCTTCTAGCTGTCCACTTGTACATAGAAACGATTC
GTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17709.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis