Browse Element(s) Details


OsAffx.17712.1.S1_at

Description tigr:9637.m01246
TID=OsAffx.17712.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=similar to neoxanthin cleavage enzyme, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1524011/11Retinal pigment epithelial membrane protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15200OsAffx.17711.1.S1_at11/119+9227997..9230565hypothetical protein
LOC_Os09g15200OsAffx.14065.1.S1_at1/119+9227997..9230565hypothetical protein
LOC_Os09g15210OsAffx.6281.1.S1_at11/119+9232698..9233597hypothetical protein
LOC_Os09g15220Os.46012.2.S1_x_at10/119+9237164..9242848retrotransposon protein, putative, unclassified
LOC_Os09g15220Os.27088.1.A1_x_at6/119+9237164..9242848retrotransposon protein, putative, unclassified
LOC_Os09g15220Os.46012.3.S1_x_at6/119+9237164..9242848retrotransposon protein, putative, unclassified
LOC_Os09g15220Os.54691.1.S1_x_at1/119+9237164..9242848retrotransposon protein, putative, unclassified
LOC_Os09g15230Os.46808.1.S1_at11/119+9244914..9245867expressed protein
LOC_Os09g15230Os.46808.2.S1_x_at2/119+9244914..9245867expressed protein
LOC_Os09g15240OsAffx.17712.1.S1_at11/119+9250213..9254027Retinal pigment epithelial membrane protein, expressed
LOC_Os09g15250Os.50616.1.S2_x_at11/119+9263205..9268413retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15250Os.50616.1.S1_x_at11/119+9263205..9268413retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15250Os.50616.1.S2_at8/119+9263205..9268413retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009688biological_processabscisic acid biosynthesis
GO:0042538biological_processhyperosmotic salinity response
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0009579cellular_componentthylakoid
GO:0045549molecular_function9-cis-epoxycarotenoid dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17712.1.S1_at--888--1211Chr09:9251407..9251431 (25 bp)
AGTTATGCCCCGTTATGGTGATGCA
LOC_Os09g15240
OsAffx.17712.1.S1_at--77--10771Chr09:9251366..9251390 (25 bp)
TTGACGTTGAACCATTCTGCATGTT
LOC_Os09g15240
OsAffx.17712.1.S1_at--870--4991Chr09:9251348..9251372 (25 bp)
GCATGTTCCATTTTATCAACTGCTT
LOC_Os09g15240
OsAffx.17712.1.S1_at--758--8391Chr09:9251125..9251149 (25 bp)
GGCCCTCGGATCAGCCTAAACAAAA
LOC_Os09g15240
OsAffx.17712.1.S1_at--432--211Chr09:9251097..9251121 (25 bp)
ATTTGCTCTCTGATCCTTCTAAGTG
LOC_Os09g15240
OsAffx.17712.1.S1_at--880--171Chr09:9251045..9251069 (25 bp)
ATTTTTCTCTCGATTATACCAGTGG
LOC_Os09g15240
OsAffx.17712.1.S1_at--615--8511Chr09:9250959..9250983 (25 bp)
TGGAATTCCCTGTGATCAATGACCA
LOC_Os09g15240
OsAffx.17712.1.S1_at--700--2991Chr09:9250942..9250966 (25 bp)
AATGACCACTACACAGGCTTGCATC
LOC_Os09g15240
OsAffx.17712.1.S1_at--763--10231Chr09:9250886..9250910 (25 bp)
TTTGGAAAGCTCTTACGGCGTTAAT
LOC_Os09g15240
OsAffx.17712.1.S1_at--838--9771Chr09:9250710..9250734 (25 bp)
TATGGAGGCCTTGCAAAACTTTGTC
LOC_Os09g15240
OsAffx.17712.1.S1_at--469--6151Chr09:9250314..9250337 (24 bp)
GAGGTGCACATTATTGACGCCCAAA
LOC_Os09g15240
Target Sequence 
AGTTATGCCCCGTTATGGTGATGCAGAATCAGTTATGTGGTTTGACGTTGAACCATTCTGCATGTTCCATTTTATCAACT
GCTTTGAAGAGGGTGATGAGGTTGTTATCAGGGGCTTTCGTGCGGCTGACTCCATCATTCCAGGCCCTCGGATCAGCCTA
AACAAAAATGATTTGCTCTCTGATCCTTCTAAGTGTTCTGTGAAACAAGGAATTAATGAAGAATTTTTCTCTCGATTATA
CCAGTGGAGATTAAACACGAAGACAAAGGCTGTTTCAGGGCAATATTTAAGTGGAACTGAGTTTTCCATGGAATTCCCTG
TGATCAATGACCACTACACAGGCTTGCATCATAGTTATGCCTATGCACAAGTGGTGGATTCTTTGGAAAGCTCTTACGGC
GTTAATGAGAAAGTAATCCTGAAATATGGAGGCCTTGCAAAACTTTGTCTTGAAGAGGCAGATAATGTAATTGCAGAGGT
GCACATTATTGACGCCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17712.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis