Browse Element(s) Details


OsAffx.3297.1.S1_at

Description tigr:9631.m02258
TID=OsAffx.3297.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2263411/11terpene synthase 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22610Os.20572.1.A1_at10/113+13010076..13014845Peptidyl-tRNA hydrolase, putative, expressed
LOC_Os03g22610OsAffx.27409.1.S1_x_at2/113+13010076..13014845Peptidyl-tRNA hydrolase, putative, expressed
LOC_Os03g22610Os.24682.1.A1_at1/113+13010076..13014845Peptidyl-tRNA hydrolase, putative, expressed
LOC_Os03g22620Os.20572.2.S1_at11/113+13014066..13024948Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g22620Os.52722.1.S1_at11/113+13014066..13024948Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g22634OsAffx.3297.1.S1_at11/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634Os.26852.1.A1_at11/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634OsAffx.6281.1.S1_at2/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634Os.12629.1.S2_at1/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22650NANA3+13057480..13058058hypothetical protein
LOC_Os03g22670Os.49739.1.S2_at11/113+13066237..13072596triacylglycerol Lipase, putative, expressed
LOC_Os03g22670Os.49739.1.S1_at10/113+13066237..13072596triacylglycerol Lipase, putative, expressed
LOC_Os03g22680Os.49023.1.S1_x_at11/113+13074632..13077118CHY zinc finger family protein, expressed
LOC_Os03g22680Os.53636.1.S1_at4/113+13074632..13077118CHY zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0016099biological_processmonoterpenoid biosynthesis
GO:0016106biological_processsesquiterpenoid biosynthesis
GO:0042408molecular_functionmyrcene/(E)-beta-ocimene synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3297.1.S1_at--302--1395Chr04:13753313..13753337 (25 bp)
AGACTCCGGCCTATAGCTCTATGAT
NONE
OsAffx.3297.1.S1_at--1071--4811Chr03:13037173..13037197 (25 bp)
GCTCTATGATGCTCCCAAACGTGAA
LOC_Os03g22634
OsAffx.3297.1.S1_at--1070--10351Chr03:13036122..13036146 (25 bp)
TTTTAATAACTATCCTCCGCATTCC
LOC_Os03g22634
OsAffx.3297.1.S1_at--825--6151Chr03:13036079..13036103 (25 bp)
GAGGTTTCCTACCTTGAGCCTTGCA
LOC_Os03g22634
OsAffx.3297.1.S1_at--1161--5051Chr03:13036057..13036081 (25 bp)
GCACCACCGACTTTAGGACAACGAT
LOC_Os03g22634
OsAffx.3297.1.S1_at--413--2591Chr03:13036038..13036062 (25 bp)
AACGATATCTGTCGCCACGTGGAAG
LOC_Os03g22634
OsAffx.3297.1.S1_at--704--5631Chr03:13035943..13035967 (25 bp)
GACACTGCCTGGTGGGTTCTCATGA
LOC_Os03g22634
OsAffx.3297.1.S1_at--865--811Chr03:13035919..13035943 (25 bp)
ATGGTGCATGGTGGTTGGCTTCAAA
LOC_Os03g22634
OsAffx.3297.1.S1_at--55--7451Chr03:13035856..13035880 (25 bp)
GTGTACTCGCATCTGATTGGCCAGA
LOC_Os03g22634
OsAffx.3297.1.S1_at--1097--5651Chr03:13035833..13035857 (25 bp)
GACATGTCAGGTGGTTTTCATCCAA
LOC_Os03g22634
OsAffx.3297.1.S1_at--997--10051Chr03:13035660..13035684 (25 bp)
TAGTATTAGGATGCGTCCCATCTGC
LOC_Os03g22634
Target Sequence 
AGACTCCGGCCTATAGCTCTATGATGCTCCCAAACGTGAAGGATTACAAAGGACGGACATGGCTGTTACCACTTGCCGCC
TACCTCTACAACCCATGGAGCACACAACAAACAAAGCCCGCTGTCCGGTCCGATTTTAATAACTATCCTCCGCATTCCTC
CAACCATCATTGGATGGAGGTTTCCTACCTTGAGCCTTGCACCACCGACTTTAGGACAACGATATCTGTCGCCACGTGGA
AGCTGAGCGCAAGGGGAGCCAAGCTGCTTCTACCGAACCCTGGTCGAGCCCCTCACGTCGCCTTTTGCCTGGGACACTGC
CTGGTGGGTTCTCATGATGGTGCATGGTGGTTGGCTTCAAATATGTTGATTTTACTTTGGTTTGTGGGCCTTCCAATCCG
TGTACTCGCATCTGATTGGCCAGACATGTCAGGTGGTTTTCATCCAAAATTCACATGCATACAAATATTCACCAAGACTT
GCGGAAATGGAATTGAAGGTCGAATTTGGTACTTAAGAACCGTCAACATAGTATTAGGATGCGTCCCATCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis