Browse Element(s) Details


Os.49023.1.S1_x_at

Description gb:AK059950.1
DB_XREF= gi:32969968
TID=Os.49023.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49023 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-211-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-B01, full insert sequence.
FL= gb:AK059950.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2268011/11CHY zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22634OsAffx.3297.1.S1_at11/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634Os.26852.1.A1_at11/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634OsAffx.6281.1.S1_at2/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634Os.12629.1.S2_at1/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22650NANA3+13057480..13058058hypothetical protein
LOC_Os03g22670Os.49739.1.S2_at11/113+13066237..13072596triacylglycerol Lipase, putative, expressed
LOC_Os03g22670Os.49739.1.S1_at10/113+13066237..13072596triacylglycerol Lipase, putative, expressed
LOC_Os03g22680Os.49023.1.S1_x_at11/113+13074632..13077118CHY zinc finger family protein, expressed
LOC_Os03g22680Os.53636.1.S1_at4/113+13074632..13077118CHY zinc finger family protein, expressed
LOC_Os03g22690Os.11847.1.S1_at11/113+13079157..13088173nucleoporin interacting component, putative, expressed
LOC_Os03g22690Os.32544.1.S1_at1/113+13079157..13088173nucleoporin interacting component, putative, expressed
LOC_Os03g22700Os.53969.1.S1_at11/113+13089745..13094569Protein kinase domain containing protein, expressed
LOC_Os03g22720Os.10709.1.S1_at11/113+13101461..13103329expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49023.1.S1_x_at--1120--2532Chr04:34577067..34577086 (20 bp)
AACTCCATGAAGAACAACTGCCCCA
NONE
Os.49023.1.S1_x_at--825--9171Chr03:13075719..13075863 (25 bp)
TGCCCCATCTGTTACGAGTATCTGT
LOC_Os03g22680
Os.49023.1.S1_x_at--804--1191Chr03:13075703..13075727 (25 bp)
AGTATCTGTTTGACTCTCTAAGGGA
LOC_Os03g22680
Os.49023.1.S1_x_at--407--6731Chr03:13075478..13075502 (25 bp)
GTTCTCTTGTCCCATATGCTCGATG
LOC_Os03g22680
Os.49023.1.S1_x_at--4--4811Chr03:13075461..13075485 (25 bp)
GCTCGATGCCTATCTTTGACATGGA
LOC_Os03g22680
Os.49023.1.S1_x_at--3--2231Chr03:13075437..13075461 (25 bp)
ACAAGTTCTTGAGGGCTTTGGACGC
LOC_Os03g22680
Os.49023.1.S1_x_at--947--5151Chr03:13074951..13074975 (25 bp)
GCAACGACTGCAGGGACACGACGCA
LOC_Os03g22680
Os.49023.1.S1_x_at--1084--1071Chr03:13074908..13074932 (25 bp)
AGGGCACAAGTGCTGCCATTGCCAG
LOC_Os03g22680
Os.49023.1.S1_x_at--590--7771Chr03:13074854..13074878 (25 bp)
GGTGCTCCCTGCTTAATTAAATTGA
LOC_Os03g22680
Os.49023.1.S1_x_at--1029--9651Chr03:13074811..13074835 (25 bp)
TCAGCTGCAGATGCTGTCAGCACCG
LOC_Os03g22680
Os.49023.1.S1_x_at--239--5471Chr03:13074696..13074720 (25 bp)
GAACTGCATGGGTCACATCTTGTAT
LOC_Os03g22680
Target Sequence 
AACTCCATGAAGAACAACTGCCCCATCTGTTACGAGTATCTGTTTGACTCTCTAAGGGAGACNTNNNNNNNNAGATNNGN
NNNCNCNNTNNNNNNNNNNTGNTNNNNNNNGATGCNNNANNANNNNANGTTCTCTTGTCCCATATGCTCGATGCCTATCT
TTGACATGGACAAGTTCTTGAGGGCTTTGGACGCTGAGATTGAAGCAAATATGCTGCACATAGATTACATGGGAAAGGGA
TGGATCGTGTGCAACGACTGCAGGGACACGACGCAGGTGTACGCGAGGGTGGCAGGGCACAAGTGCTGCCATTGCCAGTC
TCACAACACCTGCAGGGTGGCTGCCCCGGTGCTCCCTGCTTAATTAAATTGAGTAAATTTCATATAAAATTCAGCTGCAG
ATGCTGTCAGCACCGCAGCATCATATTATTGATTTATACTTAGTATTCAGTAGTATTGGCTGGGTTATTTTAAGTAGCCA
ATTAAGTGTATTTTCAGTCCAACATGAACTGCATGGGTCACATCTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49023.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis