Browse Element(s) Details


Os.36388.1.S1_at

Description gb:AK063551.1
DB_XREF= gi:32973569
TID=Os.36388.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36388 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1131_E05.7 (OJ1131_E05.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-E02, full insert sequence.
FL= gb:AK063551.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3495011/11expressed protein
LOC_Os07g271401/11AT hook motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34890NANA7+20909530..20912018hypothetical protein
LOC_Os07g34900OsAffx.16561.1.S1_at1/117+20917671..20919038Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g34910OsAffx.5530.1.S1_at11/117+20924209..20924748Aspartic proteinase nepenthesin-1 precursor, putative
LOC_Os07g34920Os.29830.1.S1_at11/117+20925158..20926689Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g34930OsAffx.22554.1.S1_at11/117+20928675..20929421retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g34940Os.19326.1.S1_at11/117+20929967..20931736Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g34950Os.36388.1.S1_at11/117+20934397..20939958expressed protein
LOC_Os07g34950OsAffx.16562.1.A1_x_at9/117+20934397..20939958expressed protein
LOC_Os07g34950Os.36388.2.S1_x_at9/117+20934397..20939958expressed protein
LOC_Os07g34950OsAffx.16562.1.A1_at4/117+20934397..20939958expressed protein
LOC_Os07g34970OsAffx.28754.2.S1_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34970OsAffx.28754.1.S1_x_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34970OsAffx.28754.1.S1_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34980Os.33894.1.S1_at11/117+20956926..20960693Protein kinase domain containing protein
LOC_Os07g34980Os.33894.3.S1_x_at11/117+20956926..20960693Protein kinase domain containing protein
LOC_Os07g34990OsAffx.16563.1.S1_at11/117+20962384..20963037hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36388.1.S1_at--392--4311Chr07:20939367..20939391 (25 bp)
CCTTCCTTGTCTAAGCTGGTTTCAA
LOC_Os07g34950
Os.36388.1.S1_at--464--731Chr07:20939469..20939493 (25 bp)
ATGTTTTGCCCTGTGAAATTGTGGA
LOC_Os07g34950
Os.36388.1.S1_at--732--31Chr07:20939486..20939510 (25 bp)
ATTGTGGATAACCATGCCAGTCCCT
LOC_Os07g34950
Os.36388.1.S1_at--82--591Chr07:20939499..20939523 (25 bp)
ATGCCAGTCCCTGCTTGGAAACTCT
LOC_Os07g34950
Os.36388.1.S1_at--749--4271Chr07:20939508..20939532 (25 bp)
CCTGCTTGGAAACTCTCTTCTAGTT
LOC_Os07g34950
Os.36388.1.S1_at--884--231Chr07:20939536..20939560 (25 bp)
ATATATGTTGTCCACACCATTGCCT
LOC_Os07g34950
Os.36388.1.S1_at--718--71Chr07:20939554..20939578 (25 bp)
ATTGCCTTCTTGAAACATGGAACAG
LOC_Os07g34950
Os.36388.1.S1_at--162--10371Chr07:20939814..20939838 (25 bp)
TTTTTAGCAAGGATGAAGTCTCTCT
LOC_Os07g34950
Os.36388.1.S1_at--471--2851Chr07:20939829..20939853 (25 bp)
AAGTCTCTCTTGTTAATAGATGCGA
LOC_Os07g34950
Os.36388.1.S1_at--244--2031Chr07:20939851..20939875 (25 bp)
CGAACTACTTTGAGATTTAGGGCCT
LOC_Os07g34950
Os.36388.1.S1_at--1038--10393Chr08:26840524..26840543 (20 bp)
TTTTGAATGTGTTCACTTTGTTGCT
NONE
Target Sequence 
CCTTCCTTGTCTAAGCTGGTTTCAATGTCTGAATATTTTGAACAACAATGTAAATTGTTAGCAAAAATATAGTAAGCTCA
AGTTTTTTTTGGACAAAATTTTATGTTTTGCCCTGTGAAATTGTGGATAACCATGCCAGTCCCTGCTTGGAAACTCTCTT
CTAGTTTCTATATATGTTGTCCACACCATTGCCTTCTTGAAACATGGAACAGGGGGAGGATGCATCAATTGAAGCTGCTG
TGATGGCCGTATCACGCTGTCTGAGAGAGCCCACTGGGGCAAATAACTGCTCTGAGGTTCTGTAGATGTGAAGACAAGCA
AGTGCAACATATGTATAGAAGCGAAAAAAAAAGTCCAAGAGCTATACTAAATAGTACGAGGCCAAGGACCATTCAGGTTT
CTTTTTTCAGTTGTACACATAAACTCATCATTTTGACTAATTCTGATTTTTTAGCAAGGATGAAGTCTCTCTTGTTAATA
GATGCGAACTACTTTGAGATTTAGGGCCTGTTCACTTTGATGCCAAAAAAAAAAACCTATGTTGCTAAAATTTTGGCAAG
ATAATTATTTTGAATGTGTTCACTTTGTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36388.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis