Browse Element(s) Details


Os.33894.1.S1_at

Description gb:AK072564.1
DB_XREF= gi:32982587
TID=Os.33894.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33894 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1131_E05.12 (OJ1131_E05.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023134B04, full insert sequence.
FL= gb:AK072564.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3498011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34950Os.36388.1.S1_at11/117+20934397..20939958expressed protein
LOC_Os07g34950OsAffx.16562.1.A1_x_at9/117+20934397..20939958expressed protein
LOC_Os07g34950Os.36388.2.S1_x_at9/117+20934397..20939958expressed protein
LOC_Os07g34950OsAffx.16562.1.A1_at4/117+20934397..20939958expressed protein
LOC_Os07g34970OsAffx.28754.2.S1_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34970OsAffx.28754.1.S1_x_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34970OsAffx.28754.1.S1_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34980Os.33894.1.S1_at11/117+20956926..20960693Protein kinase domain containing protein
LOC_Os07g34980Os.33894.3.S1_x_at11/117+20956926..20960693Protein kinase domain containing protein
LOC_Os07g34990OsAffx.16563.1.S1_at11/117+20962384..20963037hypothetical protein
LOC_Os07g35004Os.37128.1.S1_at11/117+20968325..20974252Protein kinase domain containing protein, expressed
LOC_Os07g35020Os.10626.4.A1_s_at11/117+20978248..20978679hypothetical protein
LOC_Os07g35020Os.40531.1.A1_x_at3/117+20978248..20978679hypothetical protein
LOC_Os07g35030NANA7+20983126..20983554hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33894.1.S1_at--421--3211Chr07:20960343..20960367 (25 bp)
CAAGGTAGAGTAGTGGATTCCCATC
LOC_Os07g34980
Os.33894.1.S1_at--9--6591Chr07:20960358..20960382 (25 bp)
GATTCCCATCATAGCCATTCAATAG
LOC_Os07g34980
Os.33894.1.S1_at--941--2411Chr07:20960392..20960416 (25 bp)
AAAACTACGGATCGACAATGTCATT
LOC_Os07g34980
Os.33894.1.S1_at--361--5611Chr07:20960405..20960429 (25 bp)
GACAATGTCATTTGTGGGTGCAAGC
LOC_Os07g34980
Os.33894.1.S1_at--334--10731Chr07:20960416..20960440 (25 bp)
TTGTGGGTGCAAGCGACGGTCCAAT
LOC_Os07g34980
Os.33894.1.S1_at--311--3251Chr07:20960425..20960449 (25 bp)
CAAGCGACGGTCCAATGCAGTTGCT
LOC_Os07g34980
Os.33894.1.S1_at--784--3011Chr07:20960438..20960462 (25 bp)
AATGCAGTTGCTTCTCTGTTATCCG
LOC_Os07g34980
Os.33894.1.S1_at--712--6671Chr07:20960444..20960468 (25 bp)
GTTGCTTCTCTGTTATCCGATTTAT
LOC_Os07g34980
Os.33894.1.S1_at--28--8771Chr07:20960476..20960500 (25 bp)
TGTTTAGGCGTTTAACCCAAATGTG
LOC_Os07g34980
Os.33894.1.S1_at--622--2611Chr07:20960489..20960513 (25 bp)
AACCCAAATGTGTTTCAGATCTTTT
LOC_Os07g34980
Os.33894.1.S1_at--507--7411Chr07:20960539..20960563 (25 bp)
GTGATTTTGTACTGCTATATATGAT
LOC_Os07g34980
Target Sequence 
CAAGGTAGAGTAGTGGATTCCCATCATAGCCATTCAATAGAATGATCCAAAAACTACGGATCGACAATGTCATTTGTGGG
TGCAAGCGACGGTCCAATGCAGTTGCTTCTCTGTTATCCGATTTATTTGTCTTTGTTTAGGCGTTTAACCCAAATGTGTT
TCAGATCTTTTTTTCTGTTTCATAATGTAGATTAGTGTGATTTTGTACTGCTATATATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33894.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis