Browse Element(s) Details


Os.37128.1.S1_at

Description gb:AK060565.1
DB_XREF= gi:32970583
TID=Os.37128.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37128 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1131_E05.14 (OJ1131_E05.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-H08, full insert sequence.
FL= gb:AK060565.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3500411/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34970OsAffx.28754.2.S1_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34970OsAffx.28754.1.S1_x_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34970OsAffx.28754.1.S1_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34980Os.33894.1.S1_at11/117+20956926..20960693Protein kinase domain containing protein
LOC_Os07g34980Os.33894.3.S1_x_at11/117+20956926..20960693Protein kinase domain containing protein
LOC_Os07g34990OsAffx.16563.1.S1_at11/117+20962384..20963037hypothetical protein
LOC_Os07g35004Os.37128.1.S1_at11/117+20968325..20974252Protein kinase domain containing protein, expressed
LOC_Os07g35020Os.10626.4.A1_s_at11/117+20978248..20978679hypothetical protein
LOC_Os07g35020Os.40531.1.A1_x_at3/117+20978248..20978679hypothetical protein
LOC_Os07g35030NANA7+20983126..20983554hypothetical protein
LOC_Os07g35040Os.35344.18.S1_x_at10/117+20990505..20996401transposon protein, putative, Mutator sub-class
LOC_Os07g35040Os.35344.3.S1_x_at9/117+20990505..20996401transposon protein, putative, Mutator sub-class
LOC_Os07g35040OsAffx.22940.5.S1_x_at3/117+20990505..20996401transposon protein, putative, Mutator sub-class
LOC_Os07g35050Os.33087.2.S1_at11/117+20997635..20999454F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37128.1.S1_at--937--7451Chr07:20973566..20973590 (25 bp)
GTGTCCTGCTTCTCGAGATCATAAG
LOC_Os07g35004
Os.37128.1.S1_at--111--1331Chr07:20973596..20973620 (25 bp)
AGAGGACCGCCGGATTCTACCAGTA
LOC_Os07g35004
Os.37128.1.S1_at--809--3631Chr07:20973612..20973636 (25 bp)
CTACCAGTACGGCAAATTCTTCAAT
LOC_Os07g35004
Os.37128.1.S1_at--242--2251Chr07:20973625..20973649 (25 bp)
AAATTCTTCAATCTCACAGGATATG
LOC_Os07g35004
Os.37128.1.S1_at--130--2131Chr07:20973640..20973778 (25 bp)
ACAGGATATGCGTACCAGCTATGGC
LOC_Os07g35004
Os.37128.1.S1_at--1007--9951Chr07:20973766..20973790 (25 bp)
TACCAGCTATGGCAAGAAGGGCAAT
LOC_Os07g35004
Os.37128.1.S1_at--1145--5811Chr07:20973892..20973916 (25 bp)
GACCGGCCGAACATGTCCGACGTGA
LOC_Os07g35004
Os.37128.1.S1_at--897--6191Chr07:20973957..20973981 (25 bp)
GAGGCAGCCGGCGTACTTCAACGTC
LOC_Os07g35004
Os.37128.1.S1_at--873--6991Chr07:20973969..20973993 (25 bp)
GTACTTCAACGTCAGGATCTCCAGC
LOC_Os07g35004
Os.37128.1.S1_at--797--10611Chr07:20974015..20974039 (25 bp)
TTCGGCGAGTCGTACTGCATGAGCA
LOC_Os07g35004
Os.37128.1.S1_at--682--1971Chr07:20974028..20974052 (25 bp)
ACTGCATGAGCAACGTCACGTTGAT
LOC_Os07g35004
Target Sequence 
GTGTCCTGCTTCTCGAGATCATAAGCGGCAAGAGGACCGCCGGATTCTACCAGTACGGCAAATTCTTCAATCTCACAGGA
TATGCGTACCAGCTATGGCAAGAAGGGCAATGGCACGNAGNTGGTGGACCAGGCGCTGGGGGAGGACTTCCCGGCGATGG
AGGTGATGAAGTGCGTGCAGGTGGCGCTGCTGTGCGTCCAGGACAGCGCCGACGACCGGCCGAACATGTCCGACGTGATC
GCCATGCTCGGCAGCGAGGGGGTGACGATGCCGGAGCCGAGGCAGCCGGCGTACTTCAACGTCAGGATCTCCAGCCTGGC
CGTGTCGTCCAGCTCCTTCGGCGAGTCGTACTGCATGAGCAACGTCACGTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37128.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis