Browse Element(s) Details


OsAffx.28754.1.S1_x_at

Description gb:NM_185841.1
DB_XREF= gi:34898767
GEN=OJ1131_E05.8
TID=OsAffx.28754.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1131_E05.8 (OJ1131_E05.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3497011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34900OsAffx.16561.1.S1_at1/117+20917671..20919038Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g34910OsAffx.5530.1.S1_at11/117+20924209..20924748Aspartic proteinase nepenthesin-1 precursor, putative
LOC_Os07g34920Os.29830.1.S1_at11/117+20925158..20926689Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g34930OsAffx.22554.1.S1_at11/117+20928675..20929421retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g34940Os.19326.1.S1_at11/117+20929967..20931736Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g34950Os.36388.1.S1_at11/117+20934397..20939958expressed protein
LOC_Os07g34950OsAffx.16562.1.A1_x_at9/117+20934397..20939958expressed protein
LOC_Os07g34950Os.36388.2.S1_x_at9/117+20934397..20939958expressed protein
LOC_Os07g34950OsAffx.16562.1.A1_at4/117+20934397..20939958expressed protein
LOC_Os07g34970OsAffx.28754.2.S1_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34970OsAffx.28754.1.S1_x_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34970OsAffx.28754.1.S1_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34980Os.33894.1.S1_at11/117+20956926..20960693Protein kinase domain containing protein
LOC_Os07g34980Os.33894.3.S1_x_at11/117+20956926..20960693Protein kinase domain containing protein
LOC_Os07g34990OsAffx.16563.1.S1_at11/117+20962384..20963037hypothetical protein
LOC_Os07g35004Os.37128.1.S1_at11/117+20968325..20974252Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28754.1.S1_x_at--25--1011Chr07:20945672..20945696 (25 bp)
AGGATACACTTCTCCAACCAGGATT
LOC_Os07g34970
OsAffx.28754.1.S1_x_at--289--1011Chr07:20945691..20945715 (25 bp)
AGGATTTTATCTCCAGCTTCACAAA
LOC_Os07g34970
OsAffx.28754.1.S1_x_at--1013--611Chr07:20945748..20945772 (25 bp)
ATGCTGTGACAGCTTCTGTGGCTAA
LOC_Os07g34970
OsAffx.28754.1.S1_x_at--486--3211Chr07:20945794..20945818 (25 bp)
CAAGGTGCTGCGTGCACTTACTGAT
LOC_Os07g34970
OsAffx.28754.1.S1_x_at--400--3531Chr07:20945905..20945929 (25 bp)
CATGCAGGGCATGCCATCGGAGCAA
LOC_Os07g34970
OsAffx.28754.1.S1_x_at--258--5192Chr07:20945926..20945950 (25 bp)
GCAATGCATGAACTGCCTGGATGGT
LOC_Os07g34970
OsAffx.28754.1.S1_x_at--530--6251Chr07:20945945..20945969 (25 bp)
GATGGTATCATCTCAGGCAGGCAGA
LOC_Os07g34970
OsAffx.28754.1.S1_x_at--920--2811Chr07:20945972..20945996 (25 bp)
AAGATTAGCACTACCCAGATGGGAG
LOC_Os07g34970
OsAffx.28754.1.S1_x_at--1056--1291Chr07:20946063..20946087 (25 bp)
AGATGCTACTGCTGGATGTGCTCAA
LOC_Os07g34970
OsAffx.28754.1.S1_x_at--113--2331Chr07:20946424..20946445 (22 bp)
AAAGTTTCCATAGCCATGGTGCTGG
LOC_Os07g34970
OsAffx.28754.1.S1_x_at--770--811Chr07:20946436..20946460 (25 bp)
ATGGTGCTGGAGACGAGCTTGACAA
LOC_Os07g34970
Target Sequence 
AGGATACACTTCTCCAACCAGGATTTTATCTCCAGCTTCACAAATGTGCCGGAGTGCACTGTGAATACTAACCTGAATGC
TGTGACAGCTTCTGTGGCTAAGCAATTTGAGGATCTTGTCACCAAGGTGCTGCGTGCACTTACTGATGCTGCAGTGAGTC
GACCAGAGAGGTATGCAGTAGGCAAACAGAGGTTTGAGGAGACAGGACAGACGGTGTATGGGCTAGTGCAGTGCATGCAG
GGCATGCCATCGGAGCAATGCATGAACTGCCTGGATGGTATCATCTCAGGCAGGCAGAGCAAGATTAGCACTACCCAGAT
GGGAGCGGCCATTCTTGGGGTGTGGTGCACACTGAGGTATGAAACGGATACACAGTTCTTCACTGATACCAAGATGCTAC
TGCTGGATGTGCTCAAGAAAAGTTTCCATAGCCATGGTGCTGGAGACGAGCTTGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28754.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis