Browse Element(s) Details


Os.29830.1.S1_at

Description gb:AK109794.1
DB_XREF= gi:32995003
TID=Os.29830.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29830 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1131_E05.2 (OJ1131_E05.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-E01, full insert sequence.
FL= gb:AK109794.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3492011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34880NANA7+20902519..20904138Homeobox domain containing protein
LOC_Os07g34890NANA7+20909530..20912018hypothetical protein
LOC_Os07g34900OsAffx.16561.1.S1_at1/117+20917671..20919038Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g34910OsAffx.5530.1.S1_at11/117+20924209..20924748Aspartic proteinase nepenthesin-1 precursor, putative
LOC_Os07g34920Os.29830.1.S1_at11/117+20925158..20926689Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g34930OsAffx.22554.1.S1_at11/117+20928675..20929421retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g34940Os.19326.1.S1_at11/117+20929967..20931736Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g34950Os.36388.1.S1_at11/117+20934397..20939958expressed protein
LOC_Os07g34950OsAffx.16562.1.A1_x_at9/117+20934397..20939958expressed protein
LOC_Os07g34950Os.36388.2.S1_x_at9/117+20934397..20939958expressed protein
LOC_Os07g34950OsAffx.16562.1.A1_at4/117+20934397..20939958expressed protein
LOC_Os07g34970OsAffx.28754.2.S1_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34970OsAffx.28754.1.S1_x_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34970OsAffx.28754.1.S1_at11/117+20941284..20948582Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29830.1.S1_at--880--4231Chr07:20925693..20925717 (25 bp)
CCGTGTTCCGGCTCACGCCGATGGG
LOC_Os07g34920
Os.29830.1.S1_at--878--2091Chr07:20925345..20925369 (25 bp)
ACATCCTGTACGACCTCGAGCGAGG
LOC_Os07g34920
Os.29830.1.S1_at--940--4071Chr07:20925329..20925353 (25 bp)
CGAGCGAGGCATCCTATCCTTCGAA
LOC_Os07g34920
Os.29830.1.S1_at--781--10131Chr07:20925315..20925339 (25 bp)
TATCCTTCGAACCTGCCAAATGCGG
LOC_Os07g34920
Os.29830.1.S1_at--1162--4391Chr07:20925301..20925325 (25 bp)
GCCAAATGCGGCGAGCTTTAGGATT
LOC_Os07g34920
Os.29830.1.S1_at--643--8371Chr07:20925292..20925316 (25 bp)
GGCGAGCTTTAGGATTCGCATGATC
LOC_Os07g34920
Os.29830.1.S1_at--47--5232Chr05:16182013..16182125 (25 bp)
GAATTTTCTATCAGTTGCTTTTGCA
NONE
Os.29830.1.S1_at--763--6671Chr07:20925223..20925247 (25 bp)
GTTGCTTTTGCAATTATTCTATGGA
LOC_Os07g34920
Os.29830.1.S1_at--680--10411Chr07:20925210..20925234 (25 bp)
TTATTCTATGGAGGTGTTTTCGTTC
LOC_Os07g34920
Os.29830.1.S1_at--1123--8751Chr07:20925196..20925220 (25 bp)
TGTTTTCGTTCCCAAGGCGACATTC
LOC_Os07g34920
Os.29830.1.S1_at--1146--4091Chr07:20925179..20925203 (25 bp)
CGACATTCCCTCTGTTTATTGCATG
LOC_Os07g34920
Target Sequence 
CCGTGTTCCGGCTCACGCCGATGGGCGACGGCGGGGTCATCATCGACTCCGGCACGACGTTCACCGCGCTGGAGGAGCGC
GCGTTCGTGGCGCTGGCGCGCGCGCTCGCGTCGCGCGTGCGGCTGCCCCTGGCGAGCGGCGCGCACCTCGGCCTCAGCCT
CTGCTTCGCCGCGGCGTCCCCGGAGGCCGTGGAGGTGCCGCGGCTGGTGCTCCACTTCGACGGCGCCGACATGGAGCTGC
GGCGGGAGAGCTACGTGGTGGAGGACCGGAGCGCCGGCGTGGCGTGCCTCGGGATGGTGAGCGCGCGGGGGATGTCGGTG
CTCGGCAGCATGCAGCAGCAGAACACGCACATCCTGTACGACCTCGAGCGAGGCATCCTATCCTTCGAACCTGCCAAATG
CGGCGAGCTTTAGGATTCGCATGATCAAAGAGATACATGACCATATGTACATAACTTGAATTTTCTATCAGTTGCTTTTG
CAATTATTCTATGGAGGTGTTTTCGTTCCCAAGGCGACATTCCCTCTGTTTATTGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis