Browse Element(s) Details


OsAffx.22554.1.S1_at

Description gb:NM_185837.1
DB_XREF= gi:34898759
GEN=OJ1131_E05.4
TID=OsAffx.22554.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1131_E05.4 (OJ1131_E05.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3493011/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34880NANA7+20902519..20904138Homeobox domain containing protein
LOC_Os07g34890NANA7+20909530..20912018hypothetical protein
LOC_Os07g34900OsAffx.16561.1.S1_at1/117+20917671..20919038Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g34910OsAffx.5530.1.S1_at11/117+20924209..20924748Aspartic proteinase nepenthesin-1 precursor, putative
LOC_Os07g34920Os.29830.1.S1_at11/117+20925158..20926689Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g34930OsAffx.22554.1.S1_at11/117+20928675..20929421retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g34940Os.19326.1.S1_at11/117+20929967..20931736Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g34950Os.36388.1.S1_at11/117+20934397..20939958expressed protein
LOC_Os07g34950OsAffx.16562.1.A1_x_at9/117+20934397..20939958expressed protein
LOC_Os07g34950Os.36388.2.S1_x_at9/117+20934397..20939958expressed protein
LOC_Os07g34950OsAffx.16562.1.A1_at4/117+20934397..20939958expressed protein
LOC_Os07g34970OsAffx.28754.2.S1_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34970OsAffx.28754.1.S1_x_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34970OsAffx.28754.1.S1_at11/117+20941284..20948582Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22554.1.S1_at--857--4971Chr07:20928766..20928790 (25 bp)
GCATGAAAGGTCTCTGTACGGCACT
LOC_Os07g34930
OsAffx.22554.1.S1_at--17--7011Chr07:20928781..20928805 (25 bp)
GTACGGCACTTATCTCTAATTCAGA
LOC_Os07g34930
OsAffx.22554.1.S1_at--1095--7991Chr07:20928827..20928851 (25 bp)
GGAGGCATTGGCTTTTCTTTGGCGC
LOC_Os07g34930
OsAffx.22554.1.S1_at--576--6531Chr07:20928865..20928889 (25 bp)
GATTTCGGACTGATTATCGCGCTGA
LOC_Os07g34930
OsAffx.22554.1.S1_at--308--4411Chr07:20928948..20928972 (25 bp)
GCCAGGGTCCTATATCAAGCTCAGA
LOC_Os07g34930
OsAffx.22554.1.S1_at--827--5731Chr07:20928975..20928999 (25 bp)
GACTGGTTGAACTTGCGTTTCCATG
LOC_Os07g34930
OsAffx.22554.1.S1_at--1060--4631Chr07:20928989..20929013 (25 bp)
GCGTTTCCATGACTACAAGCTTGTG
LOC_Os07g34930
OsAffx.22554.1.S1_at--409--3531Chr07:20929116..20929140 (25 bp)
CATCCAATTAACCTTCATCTACATC
LOC_Os07g34930
OsAffx.22554.1.S1_at--804--5951Chr07:20929164..20929188 (25 bp)
GAGAAGTACTATGACCTGCTATGGA
LOC_Os07g34930
OsAffx.22554.1.S1_at--1107--2691Chr07:20929204..20929228 (25 bp)
AAGCTCACAAGCTGTTGCTCATGAA
LOC_Os07g34930
OsAffx.22554.1.S1_at--703--2991Chr07:20929239..20929263 (25 bp)
AATGACCGACCAACGGGTGCATCAA
LOC_Os07g34930
Target Sequence 
GCATGAAAGGTCTCTGTACGGCACTTATCTCTAATTCAGAGTGTACCGAGACCCAAAAGAGGGAGGCATTGGCTTTTCTT
TGGCGCCATTTAAACAAAGGATTTCGGACTGATTATCGCGCTGAAAGAGATCCATTTGTCTTATGGCAATCCCTGAAGGA
TCGATTTGAAGAAGAGCAGAAGGCCAGGGTCCTATATCAAGCTCAGAATGACTGGTTGAACTTGCGTTTCCATGACTACA
AGCTTGTGTCTGAATATGACTCAGCTCTCCATCTCATAATCTCTCGATTCAAAATTTGTGGTAGAGAAATCACGCAGGAG
GAGTTAATTGAGAAGACATTATCTACATTTCATCCAATTAACCTTCATCTACATCGGCAATACAGGGCTGCAAGATATGA
GAAGTACTATGACCTGCTATGGACATTAAGAGAGGCTGAAGCTCACAAGCTGTTGCTCATGAAAGGTCAGTATAATGACC
GACCAACGGGTGCATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis