Browse Element(s) Details


OsAffx.16562.1.A1_x_at

Description gb:NM_185839.1
DB_XREF= gi:34898763
TID=OsAffx.16562.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1131_E05.6 (OJ1131_E05.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g349509/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34890NANA7+20909530..20912018hypothetical protein
LOC_Os07g34900OsAffx.16561.1.S1_at1/117+20917671..20919038Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g34910OsAffx.5530.1.S1_at11/117+20924209..20924748Aspartic proteinase nepenthesin-1 precursor, putative
LOC_Os07g34920Os.29830.1.S1_at11/117+20925158..20926689Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g34930OsAffx.22554.1.S1_at11/117+20928675..20929421retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g34940Os.19326.1.S1_at11/117+20929967..20931736Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g34950Os.36388.1.S1_at11/117+20934397..20939958expressed protein
LOC_Os07g34950OsAffx.16562.1.A1_x_at9/117+20934397..20939958expressed protein
LOC_Os07g34950Os.36388.2.S1_x_at9/117+20934397..20939958expressed protein
LOC_Os07g34950OsAffx.16562.1.A1_at4/117+20934397..20939958expressed protein
LOC_Os07g34970OsAffx.28754.2.S1_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34970OsAffx.28754.1.S1_x_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34970OsAffx.28754.1.S1_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34980Os.33894.1.S1_at11/117+20956926..20960693Protein kinase domain containing protein
LOC_Os07g34980Os.33894.3.S1_x_at11/117+20956926..20960693Protein kinase domain containing protein
LOC_Os07g34990OsAffx.16563.1.S1_at11/117+20962384..20963037hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16562.1.A1_x_at--583--1311Chr07:20934366..20934390 (25 bp)
AGATGTCACCTGAAACTCTAATCCC
NONE
OsAffx.16562.1.A1_x_at--1054--2491Chr07:20934379..20934403 (25 bp)
AACTCTAATCCCCAATCCGGCAAAT
NONE
OsAffx.16562.1.A1_x_at--550--851Chr07:20934628..20934652 (25 bp)
ATGGCGACGAACATGGTTCTCCTTC
LOC_Os07g34950
OsAffx.16562.1.A1_x_at--986--10611Chr07:20934665..20934689 (25 bp)
TTCGGATAACACCTTCCGGAGCATC
LOC_Os07g34950
OsAffx.16562.1.A1_x_at--528--4951Chr07:20934691..20934715 (25 bp)
GCATTTGCGTCGTCGCCATTATCTG
LOC_Os07g34950
OsAffx.16562.1.A1_x_at--476--151Chr07:20934708..20934732 (25 bp)
ATTATCTGCTCGTCCAAGACCAATA
LOC_Os07g34950
OsAffx.16562.1.A1_x_at--403--3191Chr07:20934728..20934752 (25 bp)
CAATATTTGCTTCTTCCCTCGGCGG
LOC_Os07g34950
OsAffx.16562.1.A1_x_at--262--4932Chr07:20934796..20934820 (25 bp)
GCTTGCAGGGTTGCTGCTGCTTCTT
LOC_Os07g34950
OsAffx.16562.1.A1_x_at--253--10391Chr07:20934816..20934840 (25 bp)
TTCTTGGGCCGGTGACCTCGGAAGA
LOC_Os07g34950
OsAffx.16562.1.A1_x_at--595--8671Chr07:20934887..20934911 (25 bp)
TGTCCTTCACTTGCTGTAAGTTTCT
LOC_Os07g34950
OsAffx.16562.1.A1_x_at--151--9071Chr07:20934898..20934922 (25 bp)
TGCTGTAAGTTTCTTGGCCTTCGTC
LOC_Os07g34950
Target Sequence 
AGATGTCACCTGAAACTCTAATCCCCAATCCGGCAAATCCCACCCATCCTCGTCTTCTTCCAGGCCCCGCTTCCGCCACC
TCCTCCGTTCCCGCCGGCTCGCCGCCGCCGCCTCTCCCAGCCGCTTCCCCTCGCCGCCGCAGCCTCCTATCCTCCCTAGT
CCATCACCGCGCCTCCTTCTCCACCTCCTCCTCCAGTTGCGGGGGCTTGCGGCCCGCCTCGTCATCCCCGCGCGCAGCCA
CTCCCCCCTTCTCCGCCATTCTATGGCGACGAACATGGTTCTCCTTCCTTGCCACGCCCTTCGGATAACACCTTCCGGAG
CATCCGCATTTGCGTCGTCGCCATTATCTGCTCGTCCAAGACCAATATTTGCTTCTTCCCTCGGCGGCCGCTGCTCCGCT
TGTCGGACTCCGCCGCCCGCCGCCGCCGCCGCTTGCAGGGTTGCTGCTGCTTCTTGGGCCGGTGACCTCGGAAGAGCGGT
GCCATGGAAGGCCGCGGTCTCCAGCGCGCTTGCCGTCGCCTTGTCCTTCACTTGCTGTAAGTTTCTTGGCCTTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16562.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis