Browse Element(s) Details


OsAffx.5530.1.S1_at

Description gb:NM_185834.1
DB_XREF= gi:34898753
TID=OsAffx.5530.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1131_E05.1 (OJ1131_E05.1), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3491011/11Aspartic proteinase nepenthesin-1 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34870NANA7+20898695..20900050Eukaryotic aspartyl protease family protein
LOC_Os07g34880NANA7+20902519..20904138Homeobox domain containing protein
LOC_Os07g34890NANA7+20909530..20912018hypothetical protein
LOC_Os07g34900OsAffx.16561.1.S1_at1/117+20917671..20919038Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g34910OsAffx.5530.1.S1_at11/117+20924209..20924748Aspartic proteinase nepenthesin-1 precursor, putative
LOC_Os07g34920Os.29830.1.S1_at11/117+20925158..20926689Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g34930OsAffx.22554.1.S1_at11/117+20928675..20929421retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g34940Os.19326.1.S1_at11/117+20929967..20931736Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g34950Os.36388.1.S1_at11/117+20934397..20939958expressed protein
LOC_Os07g34950OsAffx.16562.1.A1_x_at9/117+20934397..20939958expressed protein
LOC_Os07g34950Os.36388.2.S1_x_at9/117+20934397..20939958expressed protein
LOC_Os07g34950OsAffx.16562.1.A1_at4/117+20934397..20939958expressed protein
LOC_Os07g34970OsAffx.28754.2.S1_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34970OsAffx.28754.1.S1_x_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34970OsAffx.28754.1.S1_at11/117+20941284..20948582Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5530.1.S1_at--404--1731Chr07:20924239..20924263 (25 bp)
ACGACGCCAATTACTACGTCAACCT
LOC_Os07g34910
OsAffx.5530.1.S1_at--855--5611Chr07:20924307..20924331 (25 bp)
GACACGTTCGCGTTCAACCCAAACA
LOC_Os07g34910
OsAffx.5530.1.S1_at--681--1831Chr07:20924489..20924513 (25 bp)
ACGCGAGCAAGAACGTCGTCACCGT
LOC_Os07g34910
OsAffx.5530.1.S1_at--581--6311Chr07:20924520..20924544 (25 bp)
GATGACGATGCACTTCGACGGCATG
LOC_Os07g34910
OsAffx.5530.1.S1_at--799--831Chr07:20924548..20924572 (25 bp)
ATGGAGCTGCTGTTCGGTAACTACT
LOC_Os07g34910
OsAffx.5530.1.S1_at--1082--9111Chr07:20924555..20924579 (25 bp)
TGCTGTTCGGTAACTACTTCGCCTA
LOC_Os07g34910
OsAffx.5530.1.S1_at--791--2051Chr07:20924570..20924594 (25 bp)
ACTTCGCCTACACCGGTAAGCAGAG
LOC_Os07g34910
OsAffx.5530.1.S1_at--684--711Chr07:20924626..20924650 (25 bp)
ATGATCGGCAAGTCGAGCACCGGCT
LOC_Os07g34910
OsAffx.5530.1.S1_at--5--1771Chr07:20924644..20924668 (25 bp)
ACCGGCTCGCGCATCGGGAACTACT
LOC_Os07g34910
OsAffx.5530.1.S1_at--293--6231Chr07:20924673..20924697 (25 bp)
GATGGACTTCCACGTGCTGTACGAG
LOC_Os07g34910
OsAffx.5530.1.S1_at--564--6991Chr07:20924691..20924715 (25 bp)
GTACGAGCTCAAGAACTCCGTGCTG
LOC_Os07g34910
Target Sequence 
ACGACGCCAATTACTACGTCAACCTGCTCGGCATCTCCGTCGACGGGACACGCCTCGCTATTCCCAACGACACGTTCGCG
TTCAACCCAAACACCGGCCAAGACGCGCGGCGTCGCCTTCCAGATCGGCGCGCCGGCGACCCTGCTGGTCGAGCCGGCCT
ACACCGCCGTCGTGGAGGCGTTCAGGGCGCGGATGTCTCGGACGTACGAGGCCGTCAACGGGAGCGGCCTCCTGTGCTTC
CTCGTCGACGACGCGAGCAAGAACGTCGTCACCGTGCCCACGATGACGATGCACTTCGACGGCATGGACATGGAGCTGCT
GTTCGGTAACTACTTCGCCTACACCGGTAAGCAGAGCGGCGGCGGCGGCGGCGACGTGCTGTGCCTGATGATCGGCAAGT
CGAGCACCGGCTCGCGCATCGGGAACTACTTGCAGATGGACTTCCACGTGCTGTACGAGCTCAAGAACTCCGTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5530.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis