Browse Element(s) Details


OsAffx.16561.1.S1_at

Description tigr:9635.m03444
TID=OsAffx.16561.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Eukaryotic aspartyl protease
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3485011/11Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g349001/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34810NANA7+20857259..20863414transposon protein, putative, unclassified
LOC_Os07g34820OsAffx.5529.1.S1_at11/117+20865385..20866152transient receptor potential cation channel, subfamily N, member 1, putative
LOC_Os07g34830Os.51015.1.S1_at11/117+20872577..20875029ankyrin repeat family protein, putative, expressed
LOC_Os07g34840OsAffx.16560.1.S1_at11/117+20879505..20880374hypothetical protein
LOC_Os07g34840OsAffx.9743.2.S1_x_at1/117+20879505..20880374hypothetical protein
LOC_Os07g34850OsAffx.16561.1.S1_at11/117+20882956..20884266Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g34860OsAffx.19542.3.S1_x_at7/117+20889387..20893609retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g34870NANA7+20898695..20900050Eukaryotic aspartyl protease family protein
LOC_Os07g34880NANA7+20902519..20904138Homeobox domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16561.1.S1_at--134--4111Chr07:20883693..20883717 (25 bp)
CCTGGCCAATCTTACGGACGGAAAT
LOC_Os07g34850
OsAffx.16561.1.S1_at--722--8151Chr07:20883712..20883736 (25 bp)
GGAAATGTCCAGTCGACGCCGTTCG
LOC_Os07g34850
OsAffx.16561.1.S1_at--549--1311Chr07:20883914..20883938 (25 bp)
AGATGGTGAAGCAGGCCTTCCTGTC
LOC_Os07g34850
OsAffx.16561.1.S1_at--827--1391Chr07:20883941..20883965 (25 bp)
AGACGGCTGACGTGACCACGGTGAA
LOC_Os07g34850
OsAffx.16561.1.S1_at--948--8091Chr07:20883981..20884005 (25 bp)
GGACCTGTGCTTCAAGAGTACCGGC
LOC_Os07g34850
OsAffx.16561.1.S1_at--180--311Chr07:20884021..20884045 (25 bp)
ATAGCCGTGCCGAGTCTGGTGCTGC
LOC_Os07g34850
OsAffx.16561.1.S1_at--1095--1991Chr07:20884103..20884127 (25 bp)
ACTCGCAGGGCAGTGTGACCGTAGC
LOC_Os07g34850
OsAffx.16561.1.S1_at--460--8931Chr07:20884118..20884142 (25 bp)
TGACCGTAGCGTGCTTGATGATGCT
LOC_Os07g34850
OsAffx.16561.1.S1_at--1115--5311Chr07:20884149..20884173 (25 bp)
GAAGGGTGACCAGCCGATGTCTGTC
LOC_Os07g34850
OsAffx.16561.1.S1_at--969--751Chr07:20884165..20884189 (25 bp)
ATGTCTGTCATAGGCAACGTGATGC
LOC_Os07g34850
OsAffx.16561.1.S1_at--453--9052Chr07:20884187..20884211 (25 bp)
TGCAGATGGACATGCACCTGCTCTA
LOC_Os07g34850
Target Sequence 
CCTGGCCAATCTTACGGACGGAAATGTCCAGTCGACGCCGTTCGTCAACAACCCCGCGGTACACCCCTCGTACTACTACG
TCAACCTCACCGGCATCACCGTCGGTGAGACGGACCTCCCGGTGACGACCAGCACGTTCGGCTTCACGCAGAACGGCCTC
GGCGGCGGCACGATCGTGGACTCCGGCACCACGCTCACGTACCTCGCCAAAGACGGCTACGAGATGGTGAAGCAGGCCTT
CCTGTCCCAGACGGCTGACGTGACCACGGTGAACGGCACGCGCGGCTTGGACCTGTGCTTCAAGAGTACCGGCGGCGGCG
GCGGCGGCATAGCCGTGCCGAGTCTGGTGCTGCGCTTCGATGGCGGAGCTGAGTACGCCGTGCCAACTTACTTCGCCGGA
GTTGAGACGGACTCGCAGGGCAGTGTGACCGTAGCGTGCTTGATGATGCTGCCGGCGAAGGGTGACCAGCCGATGTCTGT
CATAGGCAACGTGATGCAGATGGACATGCACCTGCTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16561.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis