Browse Element(s) Details


OsAffx.16563.1.S1_at

Description tigr:9635.m03454
TID=OsAffx.16563.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3499011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34950Os.36388.1.S1_at11/117+20934397..20939958expressed protein
LOC_Os07g34950OsAffx.16562.1.A1_x_at9/117+20934397..20939958expressed protein
LOC_Os07g34950Os.36388.2.S1_x_at9/117+20934397..20939958expressed protein
LOC_Os07g34950OsAffx.16562.1.A1_at4/117+20934397..20939958expressed protein
LOC_Os07g34970OsAffx.28754.2.S1_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34970OsAffx.28754.1.S1_x_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34970OsAffx.28754.1.S1_at11/117+20941284..20948582Protein kinase domain containing protein, expressed
LOC_Os07g34980Os.33894.1.S1_at11/117+20956926..20960693Protein kinase domain containing protein
LOC_Os07g34980Os.33894.3.S1_x_at11/117+20956926..20960693Protein kinase domain containing protein
LOC_Os07g34990OsAffx.16563.1.S1_at11/117+20962384..20963037hypothetical protein
LOC_Os07g35004Os.37128.1.S1_at11/117+20968325..20974252Protein kinase domain containing protein, expressed
LOC_Os07g35020Os.10626.4.A1_s_at11/117+20978248..20978679hypothetical protein
LOC_Os07g35020Os.40531.1.A1_x_at3/117+20978248..20978679hypothetical protein
LOC_Os07g35030NANA7+20983126..20983554hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16563.1.S1_at--1089--51Chr07:20962924..20962948 (25 bp)
ATTGCCGTGCAACCAGCTAGATAGA
LOC_Os07g34990
OsAffx.16563.1.S1_at--600--6491Chr07:20962905..20962929 (25 bp)
GATAGAGACCTCTTCGTGGCCGCAA
LOC_Os07g34990
OsAffx.16563.1.S1_at--961--1973Chr12:27224988..27225012 (25 bp)
ACTGCACGATTTTGGAGCTCGAAAT
NONE
OsAffx.16563.1.S1_at--19--4191Chr07:20962798..20962822 (25 bp)
CCCGGATATTTTCATGGCCTCTGGA
LOC_Os07g34990
OsAffx.16563.1.S1_at--294--5591Chr07:20962716..20962740 (25 bp)
GAAATCTCTCATATCACGGAGGCGA
LOC_Os07g34990
OsAffx.16563.1.S1_at--4--6931Chr07:20962678..20962702 (25 bp)
GTATGTCCGCCTCTGGAAAATGATT
LOC_Os07g34990
OsAffx.16563.1.S1_at--287--831Chr07:20962612..20962636 (25 bp)
ATGGAACCTCACAACAGACGGGCAA
LOC_Os07g34990
OsAffx.16563.1.S1_at--638--5191Chr07:20962591..20962615 (25 bp)
GCAATACTCTGCAAAATCGGCTTAT
LOC_Os07g34990
OsAffx.16563.1.S1_at--629--3031Chr07:20962577..20962601 (25 bp)
AATCGGCTTATAGACTCCAGTTCCT
LOC_Os07g34990
OsAffx.16563.1.S1_at--931--6374Chr12:27225114..27225326 (25 bp)
GATCCGTCTTCAACCAATCAATCTG
NONE
OsAffx.16563.1.S1_at--366--2253Chr11:16889890..16889914 (25 bp)
AAATTCTTCTCCTGGTTGGTCACTC
NONE
Target Sequence 
ATTGCCGTGCAACCAGCTAGATAGAGACCTCTTCGTGGCCGCAACAACAATAACGGTGGGCAATGGCAAGACTGCACGAT
TTTGGAGCTCGAAATGGCCGGAGGATCAAACTCCGCAACAGATCGCCCCGGATATTTTCATGGCCTCTGGAAGGAAGAAC
AGATCAGTAAACGATGCCATAATAGAAAACAACTGGATCCGAGACATCGAAATCTCTCATATCACGGAGGCGAGCCACCT
CCAACAGTATGTCCGCCTCTGGAAAATGATTAGAGACATGAGGCCACTAAACGAAAATCAAGACAACATTCGATGGAACC
TCACAACAGACGGGCAATACTCTGCAAAATCGGCTTATAGACTCCAGTTCCTTGGGCTGCGCGATCCGTCTTCAACCAAT
CAATCTGGATGGGCGCCGCCAAAGTGCAAATTCTTCTCCTGGTTGGTCACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis