Browse Element(s) Details


OsAffx.8670.1.S1_at

Description gb:XM_354312.1
DB_XREF= gi:35190219
TID=OsAffx.8670.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g271504/11Trafficking protein particle complex subunit 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27120Os.8069.1.S1_at11/117+15724593..15728423expressed protein
LOC_Os07g27120Os.35374.1.S1_x_at10/117+15724593..15728423expressed protein
LOC_Os07g27130Os.45967.1.A1_at1/117+15728576..15729518hypothetical protein
LOC_Os07g27140Os.46440.1.A1_s_at11/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.27347.1.S1_a_at11/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.27347.3.S1_at10/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.36388.1.S1_at1/117+15731085..15743951AT hook motif family protein
LOC_Os07g27150Os.16878.1.S1_at11/117+15749432..15754093Trafficking protein particle complex subunit 4, putative, expressed
LOC_Os07g27150OsAffx.8670.1.S1_at4/117+15749432..15754093Trafficking protein particle complex subunit 4, putative, expressed
LOC_Os07g27159NANA7+15754852..15755082NA
LOC_Os07g27170NANA7+15757867..15764117retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27180Os.44098.1.S1_at11/117+15767049..15785663TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8670.1.S1_at--599--1891Chr07:15749323..15749347 (25 bp)
ACTGATGAGTTAGATCCAACGTCCC
NONE
OsAffx.8670.1.S1_at--210--6291Chr07:15749326..15749350 (25 bp)
GATGAGTTAGATCCAACGTCCCAGA
NONE
OsAffx.8670.1.S1_at--619--8891Chr07:15749328..15749352 (25 bp)
TGAGTTAGATCCAACGTCCCAGACA
NONE
OsAffx.8670.1.S1_at--43--1211Chr07:15749330..15749354 (25 bp)
AGTTAGATCCAACGTCCCAGACATC
NONE
OsAffx.8670.1.S1_at--454--10452Chr08:469005..469082 (25 bp)
TTAGATCCAACGTCCCAGACATCTC
NONE
OsAffx.8670.1.S1_at--143--7191Chr07:15749513..15749537 (25 bp)
GTCGGCCTGAGTCGCCGGGCTCGTC
LOC_Os07g27150
OsAffx.8670.1.S1_at--273--2671Chr07:15749544..15749566 (23 bp)
AAGCCGATCCCCTCCGCAGGGAGAG
LOC_Os07g27150
OsAffx.8670.1.S1_at--759--6371NONE
GATCCCCTCCGCAGGGAGAGAACAG
NONE
OsAffx.8670.1.S1_at--633--9291NONE
TCCGCAGGGAGAGAACAGATCTTCA
NONE
OsAffx.8670.1.S1_at--276--7652Chr07:15750337..15750358 (22 bp)
GGGAGAGAACAGATCTTCAAAGCAA
LOC_Os07g27150
OsAffx.8670.1.S1_at--1017--432Chr07:15750346..15750370 (25 bp)
ATCTTCAAAGCAAAATTCATCCTCT
LOC_Os07g27150
Target Sequence 
ACTGATGAGTTAGATCCAACGTCCCAGACATCTCCCGGCCGCACCCCCCCCCCCCCCACCACGCATCGCCTCCACCACCC
CCATCACGCCGCTGTCGCCGTCGCCATCCCGCTGCTCGTCTCCGTTGCCGTCCCCGCCCCTCCGCCCCCGATCTACGCCT
GGGCACCCGCCTCCGCGCCCCTAGATCACCGTCGGCCTGAGTCGCCGGGCTCGTCGTCGCCAAGCCGATCCCCTCCGCAG
GGAGAGAACAGATCTTCAAAGCAAAATTCATCCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8670.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis