Browse Element(s) Details


Os.44098.1.S1_at

Description gb:CF324363
DB_XREF= gi:33797000
DB_XREF=HDN--06-F09.g1
CLONE=HDN--06-F09
TID=Os.44098.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44098 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0075N02.22 (OSJNBa0075N02.22), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2718011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27140Os.46440.1.A1_s_at11/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.27347.1.S1_a_at11/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.27347.3.S1_at10/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.36388.1.S1_at1/117+15731085..15743951AT hook motif family protein
LOC_Os07g27150Os.16878.1.S1_at11/117+15749432..15754093Trafficking protein particle complex subunit 4, putative, expressed
LOC_Os07g27150OsAffx.8670.1.S1_at4/117+15749432..15754093Trafficking protein particle complex subunit 4, putative, expressed
LOC_Os07g27159NANA7+15754852..15755082NA
LOC_Os07g27170NANA7+15757867..15764117retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27180Os.44098.1.S1_at11/117+15767049..15785663TPR Domain containing protein, expressed
LOC_Os07g27190NANA7+15787397..15787817retrotransposon protein, putative, unclassified
LOC_Os07g27200OsAffx.22699.1.S1_x_at2/117+15800734..15810356retrotransposon protein, putative, unclassified
LOC_Os07g27200OsAffx.30486.1.S1_at1/117+15800734..15810356retrotransposon protein, putative, unclassified
LOC_Os07g27200OsAffx.2494.1.S1_at1/117+15800734..15810356retrotransposon protein, putative, unclassified
LOC_Os07g27200OsAffx.16451.1.A1_x_at1/117+15800734..15810356retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44098.1.S1_at--681--3731Chr07:15770809..15770833 (25 bp)
CTACACATCTCTCTGATACTCAAGA
LOC_Os07g27180
Os.44098.1.S1_at--113--5411Chr07:15770786..15770810 (25 bp)
GAAGCTGAATCTTCCAGAAGCACCT
LOC_Os07g27180
Os.44098.1.S1_at--239--5311Chr07:15770547..15770571 (25 bp)
GAAGGGTAACCTTATCGCATGCTCT
LOC_Os07g27180
Os.44098.1.S1_at--32--6671Chr07:15770514..15770538 (25 bp)
GTTGAAGCAAGTTCGGTCTCTCCAG
LOC_Os07g27180
Os.44098.1.S1_at--265--1071Chr07:15768687..15768711 (25 bp)
AGGGTTCTGGACTATGGCATGACCA
LOC_Os07g27180
Os.44098.1.S1_at--822--8271Chr07:15768672..15768696 (25 bp)
GGCATGACCAGACGAAGTTCACTAA
LOC_Os07g27180
Os.44098.1.S1_at--3--9791Chr07:15768650..15768674 (25 bp)
TAAGTATGCTCAAGCTTCCCTGCAG
LOC_Os07g27180
Os.44098.1.S1_at--882--6791Chr07:15768575..15768599 (25 bp)
GTTATTTTCAGCTGAGATGCACCTT
LOC_Os07g27180
Os.44098.1.S1_at--72--6331Chr07:15768560..15768584 (25 bp)
GATGCACCTTAAAAGCTCCTTAAAA
LOC_Os07g27180
Os.44098.1.S1_at--287--1411Chr07:15768287..15768311 (25 bp)
AGACTTCTTACATACCCCTGAGTAT
LOC_Os07g27180
Os.44098.1.S1_at--181--351Chr07:15768264..15768288 (25 bp)
ATAAAGCTCTCGATGACTGCCTTGC
LOC_Os07g27180
Target Sequence 
CTACACATCTCTCTGATACTCAAGAAGCTGAATCTTCCAGAAGCACCTCAGATGATGCAAATCAAGAGACCAGGAAGTAC
AACCAGTTGTTAGATATAATTGGTGATATCCTTCAGCAGATTGTACGAAGTGGGGGTAGCAATTCGGAGATATGGGGTTT
ATATGCGAGGTGGCATAAGACGAAGGGTAACCTTATCGCATGCTCTGAAGCTATGTTGAAGCAAGTTCGGTCTCTCCAGG
GTTCTGGACTATGGCATGACCAGACGAAGTTCACTAAGTATGCTCAAGCTTCCCTGCAGCTTTGCAAGATCTATATGGAA
ATTTCTTCTTCGACTGGAAGCCAAAGAGAGTTATTTTCAGCTGAGATGCACCTTAAAAGCTCCTTAAAACAGGCTTCAGA
CTTCTTACATACCCCTGAGTATAAAGCTCTCGATGACTGCCTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis