Browse Element(s) Details


Os.35149.2.S1_x_at

Description gb:NM_190675.1
DB_XREF= gi:34908433
GEN=P0683F02.8
TID=Os.35149.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35149 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative permease 1 (P0683F02.8), mRNA.
PROD=putative permease 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6387011/11xanthine/uracil permease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63830OsAffx.23907.1.S1_at10/111+37361249..37362498Dehydrodolichyl diphosphate synthase 2, putative, expressed
LOC_Os01g63840Os.38338.1.S1_x_at10/111+37366416..373700603-deoxy-D-manno-octulosonic-acid transferase family protein, expressed
LOC_Os01g63854OsAffx.11717.1.S1_s_at11/111+37370345..37376740expressed protein
LOC_Os01g63854Os.4919.1.S1_at11/111+37370345..37376740expressed protein
LOC_Os01g63870Os.35149.1.S1_at11/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63870Os.35149.2.S1_x_at11/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63870Os.57399.1.S1_at1/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63880Os.9790.2.S1_x_at10/111+37392500..37395745expressed protein
LOC_Os01g63890Os.3537.1.S1_at11/111+37396270..37398738G10 protein homolog, putative, expressed
LOC_Os01g63900Os.46280.1.A1_at11/111+37403342..37406387DNA excision repair protein ERCC-8, putative, expressed
LOC_Os01g63900Os.20081.1.S1_x_at10/111+37403342..37406387DNA excision repair protein ERCC-8, putative, expressed
LOC_Os01g63910Os.46440.1.A1_s_at11/111+37407138..37415781AT hook motif family protein, expressed
LOC_Os01g63910Os.27347.3.S1_at5/111+37407138..37415781AT hook motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0015646molecular_functionpermease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35149.2.S1_x_at--1001--2431Chr01:37389828..37389852 (25 bp)
AAAAGTTGGTGCCTTCATTGCTTCT
LOC_Os01g63870
Os.35149.2.S1_x_at--748--91Chr01:37389853..37389877 (25 bp)
ATTCCTGATGTTCTAGTTGCTGCTC
LOC_Os01g63870
Os.35149.2.S1_x_at--44--3771Chr01:37389875..37389899 (25 bp)
CTCTTCTTTGTTTCATGTGGGCCAT
LOC_Os01g63870
Os.35149.2.S1_x_at--260--591Chr01:37389918..37389942 (25 bp)
ATCCAATCTTCGGTATAGCGCCAAG
LOC_Os01g63870
Os.35149.2.S1_x_at--1015--4851Chr01:37389972..37389996 (25 bp)
GCTAGCTTTGTTTTTGTCCCTGTCA
LOC_Os01g63870
Os.35149.2.S1_x_at--825--8731Chr01:37389992..37390016 (25 bp)
TGTCAGTTCCATCGTACTTTCAACA
LOC_Os01g63870
Os.35149.2.S1_x_at--902--2071Chr01:37390070..37390094 (25 bp)
ACATTGTTGCATCTCATGGACCTAT
LOC_Os01g63870
Os.35149.2.S1_x_at--988--6771Chr01:37390910..37390934 (25 bp)
GTTACTGTCACTCAACATGGTCATT
LOC_Os01g63870
Os.35149.2.S1_x_at--1158--791Chr01:37390926..37390950 (25 bp)
ATGGTCATTGCGTTTTTGGTTGCCC
LOC_Os01g63870
Os.35149.2.S1_x_at--1003--8571Chr01:37390942..37390966 (25 bp)
TGGTTGCCCTCATACTTGACAATAC
LOC_Os01g63870
Os.35149.2.S1_x_at--705--8951Chr01:37390958..37390982 (25 bp)
TGACAATACTGTCCCTGGTGGTCGC
LOC_Os01g63870
Target Sequence 
AAAAGTTGGTGCCTTCATTGCTTCTATTCCTGATGTTCTAGTTGCTGCTCTTCTTTGTTTCATGTGGGCCATGCTATGTG
CCCTTGGCTTATCCAATCTTCGGTATAGCGCCAAGGGAAGCTCCAGGAACAGTATTGTAGTTGGGCTAGCTTTGTTTTTG
TCCCTGTCAGTTCCATCGTACTTTCAACAGTACAGATTACAGCCTAATTCAAACTCATCAGTTCCAACCTACTTCCAGCC
ATACATTGTTGCATCTCATGGACCTATACACACTGGATCTAGTGGGGTAAACTATATTCTCAACACGTTACTGTCACTCA
ACATGGTCATTGCGTTTTTGGTTGCCCTCATACTTGACAATACTGTCCCTGGTGGTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35149.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis