Browse Element(s) Details


OsAffx.11717.1.S1_s_at

Description tigr:9629.m06321
TID=OsAffx.11717.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6385411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63810Os.21123.1.S1_at11/111+37348393..37350692Starch binding domain containing protein, expressed
LOC_Os01g63820Os.37564.2.S1_at11/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.54436.1.S1_at11/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.3.S1_x_at10/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.1.S1_x_at10/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.3.S1_at9/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63830OsAffx.23907.1.S1_at10/111+37361249..37362498Dehydrodolichyl diphosphate synthase 2, putative, expressed
LOC_Os01g63840Os.38338.1.S1_x_at10/111+37366416..373700603-deoxy-D-manno-octulosonic-acid transferase family protein, expressed
LOC_Os01g63854OsAffx.11717.1.S1_s_at11/111+37370345..37376740expressed protein
LOC_Os01g63854Os.4919.1.S1_at11/111+37370345..37376740expressed protein
LOC_Os01g63870Os.35149.1.S1_at11/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63870Os.35149.2.S1_x_at11/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63870Os.57399.1.S1_at1/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63880Os.9790.2.S1_x_at10/111+37392500..37395745expressed protein
LOC_Os01g63890Os.3537.1.S1_at11/111+37396270..37398738G10 protein homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11717.1.S1_s_at--937--10531Chr01:37376405..37376429 (25 bp)
TTCAGTCCAAAGGTGCGTTCGTGTC
LOC_Os01g63854
OsAffx.11717.1.S1_s_at--18--10631Chr01:37376388..37376412 (25 bp)
TTCGTGTCTGACATGAGCTCTCTTG
LOC_Os01g63854
OsAffx.11717.1.S1_s_at--621--691Chr01:37376376..37376400 (25 bp)
ATGAGCTCTCTTGTTTCTCGCTTAC
LOC_Os01g63854
OsAffx.11717.1.S1_s_at--87--10571Chr01:37376347..37376371 (25 bp)
TTCTGATCACCCACTATTCTTTCTT
LOC_Os01g63854
OsAffx.11717.1.S1_s_at--833--10611Chr01:37376319..37376343 (25 bp)
TTCGTTATTTCTTTCTTGATTCCTC
LOC_Os01g63854
OsAffx.11717.1.S1_s_at--6--10791Chr01:37376304..37376328 (25 bp)
TTGATTCCTCTTTGGCGCATGTCAG
LOC_Os01g63854
OsAffx.11717.1.S1_s_at--746--2711Chr01:37376274..37376298 (25 bp)
AAGCATGTTTGGCTAGCTGCACATA
LOC_Os01g63854
OsAffx.11717.1.S1_s_at--101--4771Chr01:37376259..37376283 (25 bp)
GCTGCACATATAAGCGTAACCTGTT
LOC_Os01g63854
OsAffx.11717.1.S1_s_at--541--2631Chr01:37376242..37376266 (25 bp)
AACCTGTTTGTGTTCTGGGAGCATC
LOC_Os01g63854
OsAffx.11717.1.S1_s_at--415--3551Chr01:37376221..37376245 (25 bp)
CATCGGAGGCCGTATATTCTAGACT
LOC_Os01g63854
OsAffx.11717.1.S1_s_at--573--831Chr01:37376192..37376216 (25 bp)
ATGGATTGTCCCCAGCTATTAATAA
LOC_Os01g63854
Target Sequence 
TTCAGTCCAAAGGTGCGTTCGTGTCTGACATGAGCTCTCTTGTTTCTCGCTTACTCGCTTCTGATCACCCACTATTCTTT
CTTTCTTTCGTTATTTCTTTCTTGATTCCTCTTTGGCGCATGTCAGGCAGCAAGCATGTTTGGCTAGCTGCACATATAAG
CGTAACCTGTTTGTGTTCTGGGAGCATCGGAGGCCGTATATTCTAGACTGTTGATGGATTGTCCCCAGCTATTAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11717.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis