Browse Element(s) Details


Os.38338.1.S1_x_at

Description gb:CB675949
DB_XREF= gi:29679674
DB_XREF=OSJNEe11P08.r
CLONE=OSJNEe11P08
TID=Os.38338.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.38338 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 3-deoxy-d-manno-octulosonic-acid transferase (KDO transferase) (OJ1402_H07.14), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6384010/113-deoxy-D-manno-octulosonic-acid transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63800Os.16802.1.S1_a_at11/111+37343933..37344897Pleckstrin homology domain-containing protein 1, putative, expressed
LOC_Os01g63810Os.21123.1.S1_at11/111+37348393..37350692Starch binding domain containing protein, expressed
LOC_Os01g63820Os.37564.2.S1_at11/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.54436.1.S1_at11/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.3.S1_x_at10/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.1.S1_x_at10/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.3.S1_at9/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63830OsAffx.23907.1.S1_at10/111+37361249..37362498Dehydrodolichyl diphosphate synthase 2, putative, expressed
LOC_Os01g63840Os.38338.1.S1_x_at10/111+37366416..373700603-deoxy-D-manno-octulosonic-acid transferase family protein, expressed
LOC_Os01g63854OsAffx.11717.1.S1_s_at11/111+37370345..37376740expressed protein
LOC_Os01g63854Os.4919.1.S1_at11/111+37370345..37376740expressed protein
LOC_Os01g63870Os.35149.1.S1_at11/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63870Os.35149.2.S1_x_at11/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63870Os.57399.1.S1_at1/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63880Os.9790.2.S1_x_at10/111+37392500..37395745expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38338.1.S1_x_at--1065--4531Chr01:37367390..37367414 (25 bp)
GCCCGGCTTAGCTGGACATAATATT
LOC_Os01g63840
Os.38338.1.S1_x_at--454--2091Chr01:37367375..37367399 (25 bp)
ACATAATATTTCTGAGGCTGCTGCA
LOC_Os01g63840
Os.38338.1.S1_x_at--1078--10851NONE
TTGGTTGCGCTGTTATGACTGGTCC
NONE
Os.38338.1.S1_x_at--1138--671Chr01:37367246..37367316 (25 bp)
ATGACTGGTCCTAGTGTTGGGCACT
LOC_Os01g63840
Os.38338.1.S1_x_at--931--1291Chr01:37366743..37366767 (25 bp)
AGATGCGTTTTCCTTTATGTCAGAT
LOC_Os01g63840
Os.38338.1.S1_x_at--318--811Chr01:37366701..37366725 (25 bp)
ATGGAATTTAGTCCACCCGTTCACT
LOC_Os01g63840
Os.38338.1.S1_x_at--960--8571Chr01:37366674..37366698 (25 bp)
TGGTTCCCAAACAGACACATGCGAC
LOC_Os01g63840
Os.38338.1.S1_x_at--216--2111Chr01:37366658..37366682 (25 bp)
ACATGCGACAGCTTCTCGAGTAGTT
LOC_Os01g63840
Os.38338.1.S1_x_at--650--5671Chr01:37366574..37366598 (25 bp)
GACATCTTCTAGTAACTTGCAGGGA
LOC_Os01g63840
Os.38338.1.S1_x_at--611--1031Chr01:37366510..37366534 (25 bp)
AGGTCTCACGAATTTCTCTGTACAG
LOC_Os01g63840
Os.38338.1.S1_x_at--716--2391Chr01:37366470..37366494 (25 bp)
AAACTTGTACTCCTAGCATGCCGGT
LOC_Os01g63840
Target Sequence 
GCCCGGCTTAGCTGGACATAATATTTCTGAGGCTGCTGCAGTTGGTTGCGCTGTTATGACTGGTCCTAGTGTTGGGCACT
TCTATCATATGCTGGTCGAAATGTGGCAAATAAATCCTTTAGCTGTCAAGCAGGTCAAAGGAGAATATGAACTTTTGGAA
GCACTAAAACAACTGCTTGGTGATTCTAGAGCTCTGGAAGCATGTCAAAGAGCCGCAAAAGATGCGTTTTCCTTTATGTC
AGATGGAGTTGTCAATCGTGTATGGAATTTAGTCCACCCGTTCACTATTGGTTCCCAAACAGACACATGCGACAGCTTCT
CGAGTAGTTAGTATGGAAGGCTTGCACATGGAAGTATGGAAAATCAGGGTAGTCACATTTAAAACATTGACATCTTCTAG
TAACTTGCAGGGACAGGTTGACAATGTATGAGTCCTCTTTATTAGGAAGATAAGGTCTCACGAATTTCTCTGTACAGTCT
GATGCACATAACAAACTTGTACTCCTAGCATGCCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38338.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis