Browse Element(s) Details


Os.16802.1.S1_a_at

Description gb:AK072489.1
DB_XREF= gi:32982512
TID=Os.16802.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16802 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1402_H07.10 (OJ1402_H07.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023130C15, full insert sequence.
FL= gb:AK072489.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6380011/11Pleckstrin homology domain-containing protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63770Os.6258.1.S1_a_at11/111+37325187..37331492AUX1-like permease, putative, expressed
LOC_Os01g63770OsAffx.7026.1.S1_x_at2/111+37325187..37331492AUX1-like permease, putative, expressed
LOC_Os01g63780OsAffx.11715.1.S1_at10/111+37332994..37338205Nsp1-like C-terminal region family protein, expressed
LOC_Os01g63780Os.25247.1.A1_at2/111+37332994..37338205Nsp1-like C-terminal region family protein, expressed
LOC_Os01g63790NANA1+37338746..37340164expressed protein
LOC_Os01g63800Os.16802.1.S1_a_at11/111+37343933..37344897Pleckstrin homology domain-containing protein 1, putative, expressed
LOC_Os01g63810Os.21123.1.S1_at11/111+37348393..37350692Starch binding domain containing protein, expressed
LOC_Os01g63820Os.37564.2.S1_at11/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.54436.1.S1_at11/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.3.S1_x_at10/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.1.S1_x_at10/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.3.S1_at9/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63830OsAffx.23907.1.S1_at10/111+37361249..37362498Dehydrodolichyl diphosphate synthase 2, putative, expressed
LOC_Os01g63840Os.38338.1.S1_x_at10/111+37366416..373700603-deoxy-D-manno-octulosonic-acid transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16802.1.S1_a_at--359--4191Chr01:37344314..37344338 (25 bp)
CCCGGCGGAGACCATGTACTTCATC
LOC_Os01g63800
Os.16802.1.S1_a_at--942--8011Chr01:37344362..37344386 (25 bp)
GGAGTGGATCAACTCCATCGGCCGC
LOC_Os01g63800
Os.16802.1.S1_a_at--1093--5731Chr01:37344471..37344495 (25 bp)
GACGGCGACAAGTGATCGATTTCAT
LOC_Os01g63800
Os.16802.1.S1_a_at--189--5831Chr01:37344517..37344541 (25 bp)
GACCTGTGGTTCCTGTAATACTGCA
LOC_Os01g63800
Os.16802.1.S1_a_at--636--311Chr01:37344534..37344558 (25 bp)
ATACTGCAGCATATCCATGGTACTT
LOC_Os01g63800
Os.16802.1.S1_a_at--100--3411Chr01:37344549..37344573 (25 bp)
CATGGTACTTACTTAGGTTTTGCGA
LOC_Os01g63800
Os.16802.1.S1_a_at--274--831Chr01:37344576..37344600 (25 bp)
ATGGTTCATGTTTCTTGATTTGCGA
LOC_Os01g63800
Os.16802.1.S1_a_at--158--6831Chr01:37344654..37344678 (25 bp)
GTTTAGTGTATAGGATGCGCTCTGA
LOC_Os01g63800
Os.16802.1.S1_a_at--387--611Chr01:37344668..37344692 (25 bp)
ATGCGCTCTGATACTATCCACCAGT
LOC_Os01g63800
Os.16802.1.S1_a_at--646--1691Chr01:37344687..37344711 (25 bp)
ACCAGTTCACTCCATGTAACTTTCT
LOC_Os01g63800
Os.16802.1.S1_a_at--1128--10231Chr01:37344730..37344754 (25 bp)
TTTGGTCAATTGGTCTGTGTTTAGT
LOC_Os01g63800
Target Sequence 
CCCGGCGGAGACCATGTACTTCATCGCCGACTCCGAGAAGGAGAAGGAGGAGTGGATCAACTCCATCGGCCGCTCCATCG
TCCAGCACTCCCGCTCCGTCACCGACGCCGAGNTCGTCGACTACGACAGCGGCCGTCCTGCCGCCTCAGTCNCCGCAGAC
GGCGACAAGTGATCGATTTCATCGATTGATTGGTGAGCAAAAGGACCTGTGGTTCCTGTAATACTGCAGCATATCCATGG
TACTTACTTAGGTTTTGCGATTATGGTTCATGTTTCTTGATTTGCGAACGTAAGTGTGCATTTGTATATTACTGATGCTT
ATCGGGGAATAAATTTGGGAGTTTAGTGTATAGGATGCGCTCTGATACTATCCACCAGTTCACTCCATGTAACTTTCTTT
AATAAGGTACGATTTGTTTGGTCAATTGGTCTGTGTTTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16802.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis