Browse Element(s) Details


Os.6258.1.S1_a_at

Description gb:AK103981.1
DB_XREF= gi:32989190
TID=Os.6258.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6258 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative AUX1-like permease (OJ1402_H07.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-C03, full insert sequence.
FL= gb:AK103239.1 gb:AK103981.1 gb:AK100090.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6377011/11AUX1-like permease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63740OsAffx.25936.1.S1_s_at6/111+37302994..37306723transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63740OsAffx.25936.7.S1_s_at5/111+37302994..37306723transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63740OsAffx.25936.1.S1_at3/111+37302994..37306723transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63740OsAffx.25936.5.S1_x_at2/111+37302994..37306723transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63740OsAffx.25936.2.S1_x_at1/111+37302994..37306723transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63750OsAffx.18122.1.S1_x_at2/111+37307938..37308616hypothetical protein
LOC_Os01g63760Os.10827.1.S1_x_at9/111+37308980..37312768transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63760Os.46055.2.S1_x_at4/111+37308980..37312768transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63770Os.6258.1.S1_a_at11/111+37325187..37331492AUX1-like permease, putative, expressed
LOC_Os01g63770OsAffx.7026.1.S1_x_at2/111+37325187..37331492AUX1-like permease, putative, expressed
LOC_Os01g63780OsAffx.11715.1.S1_at10/111+37332994..37338205Nsp1-like C-terminal region family protein, expressed
LOC_Os01g63780Os.25247.1.A1_at2/111+37332994..37338205Nsp1-like C-terminal region family protein, expressed
LOC_Os01g63790NANA1+37338746..37340164expressed protein
LOC_Os01g63800Os.16802.1.S1_a_at11/111+37343933..37344897Pleckstrin homology domain-containing protein 1, putative, expressed
LOC_Os01g63810Os.21123.1.S1_at11/111+37348393..37350692Starch binding domain containing protein, expressed
LOC_Os01g63820Os.37564.2.S1_at11/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.54436.1.S1_at11/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.3.S1_x_at10/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.1.S1_x_at10/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.3.S1_at9/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0009723biological_processresponse to ethylene stimulus
GO:0009733biological_processresponse to auxin stimulus
GO:0009958biological_processpositive gravitropism
GO:0009928cellular_componentcell surface (sensu Magnoliophyta)
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6258.1.S1_a_at--396--8071Chr01:37331031..37331055 (25 bp)
GGAGCAAGGAACCTCGCTCTCCTGG
LOC_Os01g63770
Os.6258.1.S1_a_at--288--8451Chr01:37331053..37331077 (25 bp)
TGGCCGGCACGGCTGCAAAAATTCA
LOC_Os01g63770
Os.6258.1.S1_a_at--298--3451Chr01:37331076..37331100 (25 bp)
CAGTGTTGCTTAGGTTTTGGTCGCC
LOC_Os01g63770
Os.6258.1.S1_a_at--993--7871Chr01:37331088..37331112 (25 bp)
GGTTTTGGTCGCCTTGTAATATACA
LOC_Os01g63770
Os.6258.1.S1_a_at--1001--8731Chr01:37331102..37331126 (25 bp)
TGTAATATACAAAGCCTCTCCTCCT
LOC_Os01g63770
Os.6258.1.S1_a_at--913--9271Chr01:37331123..37331147 (25 bp)
TCCTGTGCTAGGGTGTCACACCAAA
LOC_Os01g63770
Os.6258.1.S1_a_at--575--2791Chr01:37331161..37331185 (25 bp)
AAGAGGGCATGGGTCCCTACGATCT
LOC_Os01g63770
Os.6258.1.S1_a_at--455--811Chr01:37331230..37331254 (25 bp)
ATGGTGTCCTTGTGTTTGTTTGGCT
LOC_Os01g63770
Os.6258.1.S1_a_at--528--4291Chr01:37331259..37331283 (25 bp)
CCTCCCTCTGGCGATATATATGTGA
LOC_Os01g63770
Os.6258.1.S1_a_at--66--791Chr01:37331278..37331302 (25 bp)
ATGTGATGGTCGTCATGGCTTATAA
LOC_Os01g63770
Os.6258.1.S1_a_at--762--2331Chr01:37331301..37331325 (25 bp)
AAAGATTTTCAGCTCATGTCACATT
LOC_Os01g63770
Target Sequence 
GGAGCAAGGAACCTCGCTCTCCTGGCCGGCACGGCTGCAAAAATTCAGTGTTGCTTAGGTTTTGGTCGCCTTGTAATATA
CAAAGCCTCTCCTCCTGTGCTAGGGTGTCACACCAAAATGGTAGAAGAAGAAGAGGGCATGGGTCCCTACGATCTTGCCC
CGGGCCGTCCGCTGCCGCGTTGCTTTCCCCCGATCCTCGATGGTGTCCTTGTGTTTGTTTGGCTTGCCCCTCCCTCTGGC
GATATATATGTGATGGTCGTCATGGCTTATAAAGATTTTCAGCTCATGTCACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6258.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis