Browse Element(s) Details


OsAffx.31174.1.S1_at

Description gb:NM_191598.1
DB_XREF= gi:34910279
GEN=OSJNBa0089K24.27
TID=OsAffx.31174.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) helicase-like protein (OSJNBa0089K24.27), mRNA.
PROD=helicase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0799011/11expressed protein
LOC_Os04g5149010/11hypothetical protein
LOC_Os03g0840010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07950Os.9548.2.S1_s_at11/111+3839555..3842239glutaredoxin-related protein, expressed
LOC_Os01g07950Os.9548.1.S1_at11/111+3839555..3842239glutaredoxin-related protein, expressed
LOC_Os01g07960Os.12006.1.S1_a_at11/111+3843010..3847047Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g07960Os.56337.1.S1_at1/111+3843010..3847047Phospholipase/Carboxylesterase family protein, expressed
LOC_Os01g07970Os.34466.1.S1_s_at11/111+3851942..3852858expressed protein
LOC_Os01g07980Os.9859.4.S1_x_at11/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07980Os.9859.4.S1_at10/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07980Os.9859.3.S1_x_at3/111+3855404..3858641ankyrin-like protein, putative, expressed
LOC_Os01g07990OsAffx.31174.1.S1_at11/111+3863762..3867926expressed protein
LOC_Os01g07990OsAffx.31174.3.S1_x_at11/111+3863762..3867926expressed protein
LOC_Os01g08000Os.9859.5.S1_at11/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.1.S1_at11/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.5.S1_x_at11/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.3.S1_x_at4/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9859.3.S1_at3/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08000Os.9853.4.S1_x_at1/111+3867536..3871123Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g08010Os.33974.1.S1_at11/111+3872573..3874870expressed protein
LOC_Os01g08020Os.53395.1.S1_at11/111+3874933..3880819Boron transporter-like protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31174.1.S1_at--275--2933Chr01:3864770..3864794 (25 bp)
AAGGAATATTATAGTGCTGACACAC
LOC_Os01g07990
OsAffx.31174.1.S1_at--716--4753Chr01:3864785..3864809 (25 bp)
GCTGACACACTATCTCAATGTATGG
LOC_Os01g07990
OsAffx.31174.1.S1_at--498--3953Chr01:3864825..3864849 (25 bp)
CGGACATATTATATCCTGTCGAATA
LOC_Os01g07990
OsAffx.31174.1.S1_at--236--9213Chr01:3864865..3864889 (25 bp)
TGCCAATAATTTTCCAACTCATGTA
LOC_Os01g07990
OsAffx.31174.1.S1_at--186--10393Chr01:3864874..3864898 (25 bp)
TTTTCCAACTCATGTACTTAAGCTG
LOC_Os01g07990
OsAffx.31174.1.S1_at--215--6613Chr01:3864902..3864926 (25 bp)
GTTGGAGTTCCTATAATTTTGCTAA
LOC_Os01g07990
OsAffx.31174.1.S1_at--362--9813Chr01:3865062..3865086 (25 bp)
TAACAACCCGAGGAAATCAATGGCC
LOC_Os01g07990
OsAffx.31174.1.S1_at--1117--2954Chr01:3865080..3865104 (25 bp)
AATGGCCATTTACCTTGTGTCGACG
LOC_Os01g07990
OsAffx.31174.1.S1_at--1090--7451Chr01:3865096..3865120 (25 bp)
GTGTCGACGACATTTCCCAATAAAA
LOC_Os01g07990
OsAffx.31174.1.S1_at--663--7213Chr01:3865220..3865244 (25 bp)
GTCGCAATCTCACGAGTAAGCAATA
LOC_Os01g07990
OsAffx.31174.1.S1_at--888--5353Chr01:3865274..3865298 (25 bp)
GAAGATGGGACATGTGCAACACAAA
LOC_Os01g07990
Target Sequence 
AAGGAATATTATAGTGCTGACACACTATCTCAATGTATGGATACAACTAATGATGCGGACATATTATATCCTGTCGAATA
TTTAAATTCTCTAAATGCCAATAATTTTCCAACTCATGTACTTAAGCTGAAAGTTGGAGTTCCTATAATTTTGCTAAGAA
ATCTAAACCAAAATTTAGGATTGTGTAATGGAACAAGATTGATAATAACAAATTTAGGAGACAATATTATAGAAGGTATA
ATAATAACAGGAACTCATATAGGAGAAAAAGCATATATACCCAGAATAAACTTAACAACCCGAGGAAATCAATGGCCATT
TACCTTGTGTCGACGACATTTCCCAATAAAAGTGTGCTATTCTATGACTATAAATAAAAGCCAAGGACAAACTTTATCTA
ATGTTGGTTTATATCTAAAAAAACCAGTCTTTACACATGGCCAATTATATGTCGCAATCTCACGAGTAAGCAATAGTAAA
GGTTTAAAAATTCTAATAGAAAATGAAGATGGGACATGTGCAACACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31174.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis