Browse Element(s) Details


Os.9853.4.S1_x_at

Description gb:AK119982.1
DB_XREF= gi:37989605
TID=Os.9853.4
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9853 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023111N08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-F08, full insert sequence.
FL= gb:AK119982.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g093841/11ankyrin-like protein, putative, expressed
LOC_Os01g080001/11Histone-lysine N-methyltransferase, H3 lysine-9 specific 5, putative, expressed
LOC_Os01g093701/11Ankyrin repeat domain protein 28, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09320Os.12492.1.S1_at11/111+4736071..4741371NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os01g09320Os.25052.1.S1_x_at1/111+4736071..4741371NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os01g09330OsAffx.10981.2.S1_at11/111+4743923..4745712hypothetical protein
LOC_Os01g09330OsAffx.10981.1.S1_at11/111+4743923..4745712hypothetical protein
LOC_Os01g09340OsAffx.1136.1.S1_at4/111+4750408..4753380hypothetical protein
LOC_Os01g09350NANA1+4755527..4755790hypothetical protein
LOC_Os01g09360OsAffx.23169.1.S1_s_at11/111+4756748..4757514hypothetical protein
LOC_Os01g09360OsAffx.23169.2.S1_at11/111+4756748..4757514hypothetical protein
LOC_Os01g09370Os.9859.3.S1_x_at9/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.3.S1_at9/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.5.S1_x_at8/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.4.S1_x_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.2.S1_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9853.4.S1_x_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09384Os.45957.3.S1_x_at11/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.53325.1.S1_at9/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.3.S1_at6/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.5.S1_x_at4/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.45957.4.S1_x_at4/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9853.2.S1_x_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.49445.1.S1_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.3.S1_x_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9853.4.S1_x_at1/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09400OsAffx.32051.1.S1_x_at1/111+4783280..4784044transposon protein, putative, unclassified
LOC_Os01g09410Os.9853.2.S1_x_at10/111+4788639..4791742expressed protein
LOC_Os01g09410Os.9859.4.S1_x_at2/111+4788639..4791742expressed protein
LOC_Os01g09420Os.9850.1.S1_s_at11/111+4792957..4795256expressed protein
LOC_Os01g09420Os.22772.1.S1_at5/111+4792957..4795256expressed protein
LOC_Os01g09430Os.1465.1.S1_at9/111+4797049..4798979SyrP, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9853.4.S1_x_at--474--4691Chr01:4786727..4786751 (25 bp)
GCGGCCTTAGATGGGTACCTCGGAC
NONE
Os.9853.4.S1_x_at--997--9931Chr01:4786742..4786766 (25 bp)
TACCTCGGACGACTCGAAGGGTGCT
NONE
Os.9853.4.S1_x_at--215--551Chr01:4786792..4786812 (21 bp)
ATCCCACCCGATCGATCTGTGAGAA
NONE
Os.9853.4.S1_x_at--257--5571Chr01:4787671..4787695 (25 bp)
GAAAGGCCCGAGATGCAGTCTTAGC
NONE
Os.9853.4.S1_x_at--464--31Chr01:4787712..4787736 (25 bp)
ATTGGGTTGCTGCATGCCGCAGCAT
NONE
Os.9853.4.S1_x_at--491--591Chr01:4787735..4787759 (25 bp)
ATGCCAGGGCCATCTGACTGTTTGC
NONE
Os.9853.4.S1_x_at--360--7912Chr01:4787862..4787886 (25 bp)
GGTTGCCATGTCTACGTTTGGTAGT
NONE
Os.9853.4.S1_x_at--770--10491Chr01:4787927..4787951 (25 bp)
TTAACACCGTTTATGGCCTGTGCTG
NONE
Os.9853.4.S1_x_at--76--9133Chr01:4787947..4787971 (25 bp)
TGCTGAGTCTGGTGATGTTCCTACT
NONE
Os.9853.4.S1_x_at--173--6471Chr01:4788017..4788042 (25 bp)
GATAAAGGTGCACACAGTTCTCCAC
NONE
Os.9853.4.S1_x_at--835--4191Chr01:4788062..4788086 (25 bp)
CCCCTCAATATCCAGTTCATTCTTA
NONE
Target Sequence 
GCGGCCTTAGATGGGTACCTCGGACGACTCGAAGGGTGCTTCCTCTCCTCATCTTCGCCGTGTCCATCCCACCCGATCGA
TCTGTGAGAAGATATTATAAAGAGCCTTGATATGGGGAAAGGAAAGGCCCGAGATGCAGTCTTAGCTCGTAAAAAGGATG
GGATTGGGTTGCTGCATGCCGCAGCATGCCAGGGCCATCTGACTGTTTGCAAGTTCTTGATGGAGGAATTGGGGGGGTTG
CCATGTCTACGTTTGGTAGTATGATGTGAAGTATACCAATGTGCTGTTTATCACATATGTTTAACACCGTTTATGGCCTG
TGCTGAGTCTGGTGATGTTCCTACTGTGAAGTATTTTCTTGATCATGGTGGTGATGTAACAAAATCAGATGATAAAGGTG
CACACAGTTCTCCACCATGCTGCTGGCACAGATCCCCCTCAATATCCAGTTCATTCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9853.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis