Browse Element(s) Details


Os.53325.1.S1_at

Description gb:AK071981.1
DB_XREF= gi:32982004
TID=Os.53325.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53325 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089O19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089O19, full insert sequence.
FL= gb:AK071981.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g093849/11ankyrin-like protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09320Os.12492.1.S1_at11/111+4736071..4741371NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os01g09320Os.25052.1.S1_x_at1/111+4736071..4741371NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os01g09330OsAffx.10981.2.S1_at11/111+4743923..4745712hypothetical protein
LOC_Os01g09330OsAffx.10981.1.S1_at11/111+4743923..4745712hypothetical protein
LOC_Os01g09340OsAffx.1136.1.S1_at4/111+4750408..4753380hypothetical protein
LOC_Os01g09350NANA1+4755527..4755790hypothetical protein
LOC_Os01g09360OsAffx.23169.1.S1_s_at11/111+4756748..4757514hypothetical protein
LOC_Os01g09360OsAffx.23169.2.S1_at11/111+4756748..4757514hypothetical protein
LOC_Os01g09370Os.9859.3.S1_x_at9/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.3.S1_at9/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.5.S1_x_at8/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.4.S1_x_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.2.S1_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9853.4.S1_x_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09384Os.45957.3.S1_x_at11/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.53325.1.S1_at9/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.3.S1_at6/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.5.S1_x_at4/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.45957.4.S1_x_at4/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9853.2.S1_x_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.49445.1.S1_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.3.S1_x_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9853.4.S1_x_at1/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09400OsAffx.32051.1.S1_x_at1/111+4783280..4784044transposon protein, putative, unclassified
LOC_Os01g09410Os.9853.2.S1_x_at10/111+4788639..4791742expressed protein
LOC_Os01g09410Os.9859.4.S1_x_at2/111+4788639..4791742expressed protein
LOC_Os01g09420Os.9850.1.S1_s_at11/111+4792957..4795256expressed protein
LOC_Os01g09420Os.22772.1.S1_at5/111+4792957..4795256expressed protein
LOC_Os01g09430Os.1465.1.S1_at9/111+4797049..4798979SyrP, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53325.1.S1_at--424--7791Chr01:4766500..4766524 (25 bp)
GGTCCTATGTTACTGACTCATTGTC
LOC_Os01g09384
Os.53325.1.S1_at--330--6971Chr01:4766470..4766494 (25 bp)
GTAGCTCCGATGAATCGTCGTCAGA
LOC_Os01g09384
Os.53325.1.S1_at--795--3411Chr01:4766449..4766473 (25 bp)
CAGAGAGCAGCTCGTATAGTCCCTC
LOC_Os01g09384
Os.53325.1.S1_at--930--10151Chr01:4766435..4766459 (25 bp)
TATAGTCCCTCTCCCAGGAAAAGAA
LOC_Os01g09384
Os.53325.1.S1_at--657--3051Chr01:4766377..4766401 (25 bp)
AATCTCGGAGGTGTTCAAGTTCTTC
LOC_Os01g09384
Os.53325.1.S1_at--192--4991Chr01:4766344..4766368 (25 bp)
GCATGTCTGATTATCCACCCAGGAA
LOC_Os01g09384
Os.53325.1.S1_at--656--2811NONE
AAGATATTTCTCTCCATGAGCCCAT
NONE
Os.53325.1.S1_at--1075--5871NONE
GAGCCCATGTCATTTTTCAGTGCAC
NONE
Os.53325.1.S1_at--748--7331Chr01:4765630..4765654 (25 bp)
GTGCACGCATTTCAGACTTTAGTTT
LOC_Os01g09384
Os.53325.1.S1_at--1056--2451Chr01:4765605..4765629 (25 bp)
AACAACTGTCTGTCTCTGAATTTGA
LOC_Os01g09384
Os.53325.1.S1_at--292--2191Chr01:4765575..4765599 (25 bp)
ACACATTTCGACTTCTTCATGAACC
LOC_Os01g09384
Target Sequence 
GGTCCTATGTTACTGACTCATTGTCAGACAGTAGCTCCGATGAATCGTCGTCAGAGAGCAGCTCGTATAGTCCCTCTCCC
AGGAAAAGAAAGAGAAGGAATTCAGTTAGTCACAGAAAGAGAAAATCTCGGAGGTGTTCAAGTTCTTCCAGCAGCAGCAT
GTCTGATTATCCACCCAGGAAAAGAAAGAAAAGCCATTCTACCAAAAAGGAAAGCTCCAAAAAATGTAAAATTGAGCACT
AAGGTATTCCAACACTGCTACGACACAACTTCCATGAAGGATCTGAATGTAACAGCCATGACAAGCTGTCAAGTCCATTT
GATGGGATGGGTGCATTCTGGAAAGGATAGTTGTAGAATCTTTTAGGACTTATAGAAGATATTTCTCTCCATGAGCCCAT
GTCATTTTTCAGTGCACGCATTTCAGACTTTAGTTTAACAACTGTCTGTCTCTGAATTTGAAGAAGACACATTTCGACTT
CTTCATGAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53325.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis