Browse Element(s) Details


OsAffx.1136.1.S1_at

Description gb:NM_189646.1
DB_XREF= gi:34906375
GEN=P0512G09.18
TID=OsAffx.1136.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0512G09.18 (P0512G09.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g093404/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09300Os.18077.1.S1_at11/111+4723461..4728045oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os01g09310Os.54613.1.S1_x_at11/111+4730819..4734408expressed protein
LOC_Os01g09320Os.12492.1.S1_at11/111+4736071..4741371NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os01g09320Os.25052.1.S1_x_at1/111+4736071..4741371NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
LOC_Os01g09330OsAffx.10981.2.S1_at11/111+4743923..4745712hypothetical protein
LOC_Os01g09330OsAffx.10981.1.S1_at11/111+4743923..4745712hypothetical protein
LOC_Os01g09340OsAffx.1136.1.S1_at4/111+4750408..4753380hypothetical protein
LOC_Os01g09350NANA1+4755527..4755790hypothetical protein
LOC_Os01g09360OsAffx.23169.1.S1_s_at11/111+4756748..4757514hypothetical protein
LOC_Os01g09360OsAffx.23169.2.S1_at11/111+4756748..4757514hypothetical protein
LOC_Os01g09370Os.9859.3.S1_x_at9/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.3.S1_at9/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.5.S1_x_at8/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.4.S1_x_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9859.2.S1_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09370Os.9853.4.S1_x_at1/111+4758893..4764141Ankyrin repeat domain protein 28, putative
LOC_Os01g09384Os.45957.3.S1_x_at11/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.53325.1.S1_at9/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.3.S1_at6/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.5.S1_x_at4/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.45957.4.S1_x_at4/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9853.2.S1_x_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.49445.1.S1_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.3.S1_x_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9853.4.S1_x_at1/111+4765540..4779508ankyrin-like protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1136.1.S1_at--855--8511Chr01:4751909..4751933 (25 bp)
TGGAAGGACCGCTATGGCCAGCAAC
LOC_Os01g09340
OsAffx.1136.1.S1_at--1085--8431Chr01:4751894..4751918 (25 bp)
GGCCAGCAACTCATGATGCGATCGA
LOC_Os01g09340
OsAffx.1136.1.S1_at--934--2471Chr01:4751022..4751046 (25 bp)
AACAGTGTTGACAGTTGTGCCCCGG
LOC_Os01g09340
OsAffx.1136.1.S1_at--67--8072Chr01:4750786..4750810 (25 bp)
GGAGAACGCCATGACCAGCAATTCA
LOC_Os01g09340
OsAffx.1136.1.S1_at--495--6531Chr01:4749060..4749084 (25 bp)
GATTTCGGCTTTTCAGTGTGCTACC
NONE
OsAffx.1136.1.S1_at--927--7391Chr01:4748993..4749069 (25 bp)
GTGTGCTACCTGCAGGACCTACTAA
NONE
OsAffx.1136.1.S1_at--416--1751Chr01:4748977..4749001 (25 bp)
ACCTACTAACGGTCATGCTCTGTGA
NONE
OsAffx.1136.1.S1_at--834--9091Chr01:4748962..4748986 (25 bp)
TGCTCTGTGACGAAGCCCACTACAA
NONE
OsAffx.1136.1.S1_at--381--8031Chr01:4747671..4747695 (25 bp)
GGAGTAGCATACACGCAGCGTTCGT
NONE
OsAffx.1136.1.S1_at--1089--1631Chr01:4747655..4747679 (25 bp)
AGCGTTCGTCGGATGCAAATGCAGC
NONE
OsAffx.1136.1.S1_at--493--2291Chr01:4747639..4747663 (25 bp)
AAATGCAGCGACCAACACTCCAGGT
NONE
Target Sequence 
TGGAAGGACCGCTATGGCCAGCAACTCATGATGCGATCGAGATCGAAGAGAATGGGAAGATGGGATTTCCAAAAAAACAA
AAAAAGTATACTGGCAGGGGTTCGGAAAAAGAAACTCCGAACCTCCTGCGAAAAAAGAACGAGAGAGCAACAGTGTTGAC
AGTTGTGCCCCGGTACACCGACGCGGAGGACGAGCGGCATCTGGAGAACGCCATGACCAGCAATTCATCAGCTGAAAAGA
ATCCTACGAATTCAGTGCATGATTTCGGCTTTTCAGTGTGCTACCTGCAGGACCTACTAACGGTCATGCTCTGTGACGAA
GCCCACTACAAAATGGTCTCCAAACCCGATCCAGGCATCCAGCTGAAACTGCAGAAACATGGAGTAGCATACACGCAGCG
TTCGTCGGATGCAAATGCAGCGACCAACACTCCAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1136.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis