Browse Element(s) Details


Os.25052.1.S1_x_at

Description gb:CA763439
DB_XREF= gi:25807478
DB_XREF=BR060013A20A02.ab1
CLONE=BR060013A20A02.ab1
TID=Os.25052.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.25052 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g013805/11expressed protein
LOC_Os01g093201/11NADP-dependent malic enzyme, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01340Os.38378.1.S1_a_at11/111+165277..167177cytokinin-repressed protein CR9, putative, expressed
LOC_Os01g01350Os.30812.1.S1_at11/111+167600..169969SNF7 family protein, expressed
LOC_Os01g01360Os.34674.1.S1_at11/111+175409..177377POT family protein, expressed
LOC_Os01g01370OsAffx.1860.1.S1_at11/111+182442..183725expressed protein
LOC_Os01g01380Os.25052.1.S1_x_at5/111+186717..192964expressed protein
LOC_Os01g01380Os.53031.1.S1_at3/111+186717..192964expressed protein
LOC_Os01g01380Os.54613.1.S1_x_at3/111+186717..192964expressed protein
LOC_Os01g01390Os.799.2.S1_x_at11/111+194449..197605expressed protein
LOC_Os01g01390Os.799.1.S1_at11/111+194449..197605expressed protein
LOC_Os01g01400Os.52930.1.S1_at10/111+198746..205620expressed protein
LOC_Os01g01410Os.11121.1.S1_at11/111+202933..206408Protein kinase domain containing protein, expressed
LOC_Os01g01420Os.32481.1.S1_at11/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.1.S1_s_at11/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.2.S1_x_at9/111+206573..210988expressed protein
LOC_Os01g01420Os.32481.2.S1_at5/111+206573..210988expressed protein
LOC_Os01g01430Os.802.1.S1_at11/111+213014..214456NAM, putative, expressed
LOC_Os01g01440OsAffx.1876.2.S1_at11/111+215813..217578hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006108biological_processmalate metabolism
GO:0006633biological_processfatty acid biosynthesis
GO:0009051biological_processpentose-phosphate shunt, oxidative branch
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004470molecular_functionmalic enzyme activity
GO:0004473molecular_functionmalate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity
GO:0016652molecular_functionoxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25052.1.S1_x_at--648--6512Chr01:192568..192587 (20 bp)
GATATCTCGAAGCTATACTGCGTTT
LOC_Os01g01380
Os.25052.1.S1_x_at--277--332Chr01:192577..192601 (25 bp)
ATACTGCGTTTTAGCTGCAAGCTCA
LOC_Os01g01380
Os.25052.1.S1_x_at--226--10511Chr01:4729125..4729149 (25 bp)
TTAATACCAAGCTTATGCAGTTCGT
NONE
Os.25052.1.S1_x_at--869--5031Chr01:4729109..4729133 (25 bp)
GCAGTTCGTACAGGATGATTTGGGA
NONE
Os.25052.1.S1_x_at--384--7772Chr01:192772..192796 (25 bp)
GGTGACAGCATTTGCGCGTTTCGAA
LOC_Os01g01380
Os.25052.1.S1_x_at--938--8631Chr01:4728990..4729014 (25 bp)
TGGGATTCTCTAGCTGCCTGCTGGA
NONE
Os.25052.1.S1_x_at--540--7532Chr01:192874..192898 (25 bp)
GTGGCATGCGTGCTGCATCGACAAA
LOC_Os01g01380
Os.25052.1.S1_x_at--760--872Chr01:192900..192924 (25 bp)
ATGGCGCCTATTATAGCTTGCTGCC
LOC_Os01g01380
Os.25052.1.S1_x_at--1051--4751Chr01:4728788..4728812 (25 bp)
GCTGCAAGGCATTTTATCTGTCTAT
NONE
Os.25052.1.S1_x_at--180--5392Chr01:4736152..4736176 (25 bp)
GAAGCAATCTCCATGTGTACCACCA
LOC_Os01g09320
Os.25052.1.S1_x_at--730--3371Chr01:4728718..4728742 (25 bp)
CACCAGTGTTTGTCATTCTTTAGAT
NONE
Target Sequence 
GATATCTCGAAGCTATACTGCGTTTTAGCTGCAAGCTCAGCATCCTCCTGCTTAGATGTAACAGGAACAAGAAGCAAACA
GTTTGAGATACGCAAGAAAACTGCTGGAATGGTTGGTCTTAATACCAAGCTTATGCAGTTCGTACAGGATGATTTGGGAA
AGAAGAGGGAGAAGAAAAGGAGGAAGAAGGTCCATGTTGAGCAGAAGGATATGGTGACAGCATTTGCGCGTTTCGAAGCG
AGTGACAGTGGGGTGGGATTCTCTAGCTGCCTGCTGGATGTGTNTGAATTTCCTCAGGGTTCNTACAAGATGAAGTGGCA
TGCGTGCTGCATCGACAAAGATGGCGCCTATTATAGCTTGCTGCCTCTCAACGACGGCGCAGCCTTNTCCGTTCGCTNGT
NTCCNATGCAGTAGAGATACTGCTATGTTGTGTTGCCNTTGTNGCCGTTGCTGCTGCTGCAAGGCATTTTATCTGTCTAT
ATAAATCATCTGTTGTAACATTATGGAAGCAATCTCCATGTGTACCACCAGTGTTTGTCATTCTTTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25052.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis