Browse Element(s) Details


Os.32481.1.S1_s_at

Description gb:AK072797.1
DB_XREF= gi:32982820
TID=Os.32481.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32481 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0436E04.10 (P0436E04.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139M11, full insert sequence.
FL= gb:AK104280.1 gb:AK072797.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5520011/11expressed protein
LOC_Os01g0142011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55140Os.5433.1.S1_at11/112+33773392..33776827Cytosol aminopeptidase, putative, expressed
LOC_Os02g55150OsAffx.24878.1.S1_at11/112+33780355..33785071formin homology 2 domain-containing protein, putative, expressed
LOC_Os02g55160OsAffx.12650.1.S1_at11/112+33785317..33786760expressed protein
LOC_Os02g55170OsAffx.24879.1.S1_at11/112+33787265..33788936formin homology 2 domain-containing protein, putative
LOC_Os02g55180Os.24797.1.A1_at11/112+33791497..33797992Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os02g55190Os.50902.1.S1_at10/112+33799150..33800616expressed protein
LOC_Os02g55200Os.32481.1.S1_s_at11/112+33801145..33809546expressed protein
LOC_Os02g55200Os.10314.1.S1_a_at11/112+33801145..33809546expressed protein
LOC_Os02g55200Os.32481.2.S1_x_at6/112+33801145..33809546expressed protein
LOC_Os02g55200Os.32481.1.S1_at5/112+33801145..33809546expressed protein
LOC_Os02g55210OsAffx.24880.1.S1_at11/112+33809943..33812507carboxyl-terminal peptidase, putative, expressed
LOC_Os02g55220OsAffx.3077.1.S1_at11/112+33815753..33817887hypothetical protein
LOC_Os02g55230OsAffx.12651.1.S1_at11/112+33818582..33822379carboxyl-terminal peptidase, putative, expressed
LOC_Os02g55230OsAffx.3076.1.S1_s_at1/112+33818582..33822379carboxyl-terminal peptidase, putative, expressed
LOC_Os02g55240OsAffx.24881.1.S1_at10/112+33823002..33823853hypothetical protein
LOC_Os02g55250OsAffx.27510.1.S1_at11/112+33828040..33832179Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g55260Os.24391.1.A1_at11/112+33832794..33837763DEAD/DEAH box helicase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32481.1.S1_s_at--794--6312Chr01:210579..210603 (25 bp)
GATGACAAGTGATATGCACGGTTCT
LOC_Os01g01420
Os.32481.1.S1_s_at--838--8992Chr01:210608..210632 (25 bp)
TGAAGAGCACACTCACAGGATATAT
LOC_Os01g01420
Os.32481.1.S1_s_at--287--5292Chr01:210710..210734 (25 bp)
GAATGGTAACTGGTGTGTATTTGAG
LOC_Os01g01420
Os.32481.1.S1_s_at--288--6892Chr01:210726..210750 (25 bp)
GTATTTGAGGTTTGCTGCGACACAG
LOC_Os01g01420
Os.32481.1.S1_s_at--698--4772Chr01:210739..210763 (25 bp)
GCTGCGACACAGAATAAATACTTTC
LOC_Os01g01420
Os.32481.1.S1_s_at--78--6652Chr01:210766..210790 (25 bp)
GTTGTATATGTTTCTTGTGTCTGCC
LOC_Os01g01420
Os.32481.1.S1_s_at--337--272Chr01:210771..210795 (25 bp)
ATATGTTTCTTGTGTCTGCCACGGG
LOC_Os01g01420
Os.32481.1.S1_s_at--809--5072Chr01:210820..210844 (25 bp)
GCACCACGGAGACGAAACTTCTCGG
LOC_Os01g01420
Os.32481.1.S1_s_at--271--6692Chr01:210860..210884 (25 bp)
GTTGCCTCTGCCGTGTTATGTGAAT
LOC_Os01g01420
Os.32481.1.S1_s_at--608--9172Chr01:210868..210892 (25 bp)
TGCCGTGTTATGTGAATGTTATCCC
LOC_Os01g01420
Os.32481.1.S1_s_at--541--1492Chr01:210931..210955 (25 bp)
AGCACAGATGTTTTGTATCGCCCTA
LOC_Os01g01420
Target Sequence 
GATGACAAGTGATATGCACGGTTCTAATTTGAAGAGCACACTCACAGGATATATGNACTATCCATAATGAGGATCAGCTC
CAGTACGTAGTCTCTGTGATGCATATGGAAGGGAGTTGCTCCAGATCGAATGAATGGTAACTGGTGTGTATTTGAGGTTT
GCTGCGACACAGAATAAATACTTTCGAGTTGTATATGTTTCTTGTGTCTGCCACGGGTGGAGACCTCTTTGAGTCCCTGA
GGCACCACGGAGACGAAACTTCTCGGAAGTACTGATTCCTTGTTGCCTCTGCCGTGTTATGTGAATGTTATCCCACTGTA
TATTTATTGATGATATAATATAAGAAAAGAACAGCACAGATGTTTTGTATCGCCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32481.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis