Browse Element(s) Details


Os.24391.1.A1_at

Description gb:AK105305.1
DB_XREF= gi:32990514
TID=Os.24391.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24391 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-A11, full insert sequence.
FL= gb:AK105305.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5526011/11DEAD/DEAH box helicase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55200Os.32481.1.S1_s_at11/112+33801145..33809546expressed protein
LOC_Os02g55200Os.10314.1.S1_a_at11/112+33801145..33809546expressed protein
LOC_Os02g55200Os.32481.2.S1_x_at6/112+33801145..33809546expressed protein
LOC_Os02g55200Os.32481.1.S1_at5/112+33801145..33809546expressed protein
LOC_Os02g55210OsAffx.24880.1.S1_at11/112+33809943..33812507carboxyl-terminal peptidase, putative, expressed
LOC_Os02g55220OsAffx.3077.1.S1_at11/112+33815753..33817887hypothetical protein
LOC_Os02g55230OsAffx.12651.1.S1_at11/112+33818582..33822379carboxyl-terminal peptidase, putative, expressed
LOC_Os02g55230OsAffx.3076.1.S1_s_at1/112+33818582..33822379carboxyl-terminal peptidase, putative, expressed
LOC_Os02g55240OsAffx.24881.1.S1_at10/112+33823002..33823853hypothetical protein
LOC_Os02g55250OsAffx.27510.1.S1_at11/112+33828040..33832179Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g55260Os.24391.1.A1_at11/112+33832794..33837763DEAD/DEAH box helicase family protein, expressed
LOC_Os02g55270OsAffx.24882.1.S1_at11/112+33838016..33839278NLI interacting factor-like phosphatase family protein
LOC_Os02g55280OsAffx.12653.1.S1_at11/112+33840744..33841912NLI interacting factor-like phosphatase family protein
LOC_Os02g55290OsAffx.24964.5.S1_at11/112+33845428..33847925hypothetical protein
LOC_Os02g55290Os.21430.1.S1_at4/112+33845428..33847925hypothetical protein
LOC_Os02g55290OsAffx.24964.4.S1_x_at1/112+33845428..33847925hypothetical protein
LOC_Os02g55300Os.11760.1.S1_at11/112+33848294..33851178CCR4-NOT transcription complex subunit 7, putative, expressed
LOC_Os02g55300Os.11760.1.S2_at10/112+33848294..33851178CCR4-NOT transcription complex subunit 7, putative, expressed
LOC_Os02g55310OsAffx.24883.1.S1_at11/112+33851699..33853536pentatricopeptide, putative, expressed
LOC_Os02g55320Os.5243.1.S1_at11/112+33853956..33858973Two-component response regulator ARR12, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0008026molecular_functionATP-dependent helicase activity
GO:0017151molecular_functionDEAD/H-box RNA helicase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24391.1.A1_at--179--4351Chr02:33833951..33834075 (25 bp)
CCAGTTTTTTCCTCTGCTCTAAAGA
LOC_Os02g55260
Os.24391.1.A1_at--782--6031Chr02:33833878..33833902 (25 bp)
GAGATAAAGCGCCTAATGCTTCTAA
LOC_Os02g55260
Os.24391.1.A1_at--452--5971Chr02:33833847..33833871 (25 bp)
GAGAACCATCAATACGTGAAGCAGT
LOC_Os02g55260
Os.24391.1.A1_at--284--6911Chr02:33833784..33833808 (25 bp)
GTATCTGCATCTGCTACATAGATTT
LOC_Os02g55260
Os.24391.1.A1_at--584--2491Chr02:33833316..33833340 (25 bp)
AACAGGCTCAGCATTTAATCATGGA
LOC_Os02g55260
Os.24391.1.A1_at--532--791Chr02:33833266..33833290 (25 bp)
ATGTGTCATGTAATCCATTTGCCGT
LOC_Os02g55260
Os.24391.1.A1_at--592--3851Chr02:33833214..33833238 (25 bp)
CTGCAACCTGCTGCTTATTTTTGGT
LOC_Os02g55260
Os.24391.1.A1_at--996--4791Chr02:33833202..33833226 (25 bp)
GCTTATTTTTGGTGCACGGTACAGT
LOC_Os02g55260
Os.24391.1.A1_at--735--10571Chr02:33833142..33833166 (25 bp)
TTCTTTCCTTCTGTAGTTATAATAC
LOC_Os02g55260
Os.24391.1.A1_at--224--451Chr02:33833007..33833031 (25 bp)
ATCTATTACTATTACAGTCTCTGTT
LOC_Os02g55260
Os.24391.1.A1_at--1050--1131Chr02:33832992..33833016 (25 bp)
AGTCTCTGTTAGTAATGCGGTTTGT
LOC_Os02g55260
Target Sequence 
CCAGTTTTTTCCTCTGCTCTAAAGAAATNGGAAGAGTCTCTTGAATCAGAAGCAACAAAGAAATNTAAGTNGGGAGATAA
AGCGCCTAATGCTTCTAAAAGAAAGAGAACCATCAATACGTGAAGCAGTATAGATTAGTTGAAGTTCTAATTTATTCTTT
GTATGANGTATCTGCATCTGCTACATAGATTTNNNNNNNNNNNNNNNNNNNNNNNNGGTGATTCTCGCCTATGATAATTN
TGCAACAGGCTCAGCATTTAATCATGGATGTCCAAAACAAGAGGGATGGTTTGATGTGTCATGTAATCCATTTGCCGTNC
AATCCCCAAGCAGCTTTCCCCATCCCTGCAACCTGCTGCTTATTTTTGGTGCACGGTACAGTAGTTNTNTNCTGCNTTTA
CNCCAGGGAAGGAATTNTTCTTTCCTTCTGTAGTTATAATACATCCNCTGCTTTTCATGGCTAGGAAGGAATNTACCCCA
AAGTAAAGTTGGGTACGTTCACATCAATGTATNGTCGCTGTTAACCTTTTTGTTAGGCTTTACNCTTGAAATATCTATTA
CTATTACAGTCTCTGTTAGTAATGCGGTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24391.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis