Browse Element(s) Details


Os.5243.1.S1_at

Description gb:AK120648.1
DB_XREF= gi:37990271
TID=Os.5243.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5243 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013040N16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155K09, full insert sequence.
FL= gb:AK120648.1 gb:AK065276.1 gb:AK099581.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5532011/11Two-component response regulator ARR12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55250OsAffx.27510.1.S1_at11/112+33828040..33832179Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g55260Os.24391.1.A1_at11/112+33832794..33837763DEAD/DEAH box helicase family protein, expressed
LOC_Os02g55270OsAffx.24882.1.S1_at11/112+33838016..33839278NLI interacting factor-like phosphatase family protein
LOC_Os02g55280OsAffx.12653.1.S1_at11/112+33840744..33841912NLI interacting factor-like phosphatase family protein
LOC_Os02g55290OsAffx.24964.5.S1_at11/112+33845428..33847925hypothetical protein
LOC_Os02g55290Os.21430.1.S1_at4/112+33845428..33847925hypothetical protein
LOC_Os02g55290OsAffx.24964.4.S1_x_at1/112+33845428..33847925hypothetical protein
LOC_Os02g55300Os.11760.1.S1_at11/112+33848294..33851178CCR4-NOT transcription complex subunit 7, putative, expressed
LOC_Os02g55300Os.11760.1.S2_at10/112+33848294..33851178CCR4-NOT transcription complex subunit 7, putative, expressed
LOC_Os02g55310OsAffx.24883.1.S1_at11/112+33851699..33853536pentatricopeptide, putative, expressed
LOC_Os02g55320Os.5243.1.S1_at11/112+33853956..33858973Two-component response regulator ARR12, putative, expressed
LOC_Os02g55330Os.52557.1.S1_at10/112+33870784..33874639expressed protein
LOC_Os02g55340Os.48038.1.S1_at11/112+33879979..33887758HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009736biological_processcytokinin mediated signaling
GO:0000156molecular_functiontwo-component response regulator activity
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5243.1.S1_at--913--6511Chr02:33854668..33854692 (25 bp)
GATTTCCTCGTTTCGGGAGATATGG
LOC_Os02g55320
Os.5243.1.S1_at--755--4111Chr02:33854637..33854661 (25 bp)
CGAAGAACGCCTCCGATTTGAGCAT
LOC_Os02g55320
Os.5243.1.S1_at--637--5931Chr02:33854618..33854642 (25 bp)
GAGCATCCCGAAACTTCAGAGCGAA
LOC_Os02g55320
Os.5243.1.S1_at--144--5491Chr02:33854596..33854620 (25 bp)
GAACTTAGCTCTAGCAGCTGCAGCT
LOC_Os02g55320
Os.5243.1.S1_at--151--9911Chr02:33854313..33854337 (25 bp)
TACTCCCTTGGAGCTTGCATATGAC
LOC_Os02g55320
Os.5243.1.S1_at--1097--4951Chr02:33854297..33854321 (25 bp)
GCATATGACAGATCTCTCGTCTGCA
LOC_Os02g55320
Os.5243.1.S1_at--221--9411Chr02:33854281..33854305 (25 bp)
TCGTCTGCATCTGTGTACATGTCCC
LOC_Os02g55320
Os.5243.1.S1_at--865--7151Chr02:33854205..33854229 (25 bp)
GTCTAGGCCTGTGTATCTATGTCAA
LOC_Os02g55320
Os.5243.1.S1_at--71--811Chr02:33854147..33854171 (25 bp)
ATGGGTTGCCAACTCGACCTAGAAA
LOC_Os02g55320
Os.5243.1.S1_at--684--2371Chr02:33854100..33854124 (25 bp)
AAACCTGAGCTTACTGTCAGTTTCT
LOC_Os02g55320
Os.5243.1.S1_at--764--8071Chr02:33854005..33854029 (25 bp)
GGAGCTTCTTGGCTGTGCATATATG
LOC_Os02g55320
Target Sequence 
GATTTCCTCGTTTCGGGAGATATGGCGATGCCGAAGAACGCCTCCGATTTGAGCATCCCGAAACTTCAGAGCGAACTTAG
CTCTAGCAGCTGCAGCTTCGACGGCCTTCTCAATTCCATAGTCAAAGTGGAGAAGGATGATGTTACCTTCAGCGACNGAC
CTGGGGTGCGGCGATTTCTACTCCCTTGGAGCTTGCATATGACAGATCTCTCGTCTGCATCTGTGTACATGTCCCCCCAT
TGTATGCTGTGTACTAGCTAGCAGTGTTAGTTTGTGATGTAATCTAGTCTAGGCCTGTGTATCTATGTCAATATATGTAT
TGTAGTAGTAATCTGGAGGACGAGATGGGTTGCCAACTCGACCTAGAAAGAGAGACATTGACTGGCTTGTATAAACCTGA
GCTTACTGTCAGTTTCTTCTTCCTCGTCCTGGTTTGGNCACAGACAGCCGTGGCGCGGCTGGNATTTACATTTTAGGNCA
TATATTTGGGGAGCTTCTTGGCTGTGCATATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5243.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis