Browse Element(s) Details


Os.21430.1.S1_at

Description gb:AK069782.1
DB_XREF= gi:32979806
TID=Os.21430.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21430 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033099D14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030H04, full insert sequence.
FL= gb:AK069782.1 gb:AK102613.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0142010/11PHD-finger family protein, expressed
LOC_Os02g552904/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01390Os.20083.1.S1_at11/118+244242..252410Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os08g01400Os.49551.1.S1_at11/118+253666..254973expressed protein
LOC_Os08g01410Os.9638.1.S1_at11/118+262378..265730glucose-6-phosphate/phosphate translocator, putative, expressed
LOC_Os08g01420Os.21430.2.S1_x_at11/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01420Os.21430.2.S1_at11/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01420Os.21430.1.S1_at10/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01430Os.18020.1.S1_at11/118+271660..275000F-box domain containing protein, expressed
LOC_Os08g01440OsAffx.28974.1.S1_at11/118+276869..277765hypothetical protein
LOC_Os08g01450OsAffx.28975.2.S1_at11/118+282431..283954Cytochrome P450 71C4, putative, expressed
LOC_Os08g01450Os.38346.1.S1_x_at1/118+282431..283954Cytochrome P450 71C4, putative, expressed
LOC_Os08g01460OsAffx.28976.1.S1_at10/118+284948..285726hypothetical protein
LOC_Os08g01470OsAffx.28975.1.S1_at11/118+287030..288535Cytochrome P450 family protein
LOC_Os08g01470Os.38346.1.S1_x_at1/118+287030..288535Cytochrome P450 family protein
LOC_Os08g01480Os.50798.1.S1_at9/118+290626..292020Cytochrome P450 71C4, putative, expressed
LOC_Os08g01490Os.15815.1.S1_at11/118+295361..297693Cytochrome P450 71C4, putative, expressed
LOC_Os08g01490Os.15815.2.S1_x_at11/118+295361..297693Cytochrome P450 71C4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21430.1.S1_at--373--10111Chr08:267033..267057 (25 bp)
TATGTAGTCTTTTAGCTGGGCGGAA
LOC_Os08g01420
Os.21430.1.S1_at--889--8651Chr08:266955..266979 (25 bp)
TGTGAATGTTGTCCTGTACTTGCCC
LOC_Os08g01420
Os.21430.1.S1_at--950--7011Chr08:266940..266964 (25 bp)
GTACTTGCCCTGTGATGGTATTCTT
LOC_Os08g01420
Os.21430.1.S1_at--797--9492Chr08:266876..266900 (25 bp)
TCTCCTTTTTATTGCTTGATTCGTC
LOC_Os08g01420
Os.21430.1.S1_at--1053--6572Chr08:266859..266883 (25 bp)
GATTCGTCATTGTTTATAGCCTGTG
LOC_Os08g01420
Os.21430.1.S1_at--748--6812Chr08:266848..266872 (25 bp)
GTTTATAGCCTGTGATCGATGATTG
LOC_Os08g01420
Os.21430.1.S1_at--97--7872Chr08:266789..266813 (25 bp)
GGTTTGGTTGATCCTGAAGCTTTTT
LOC_Os08g01420
Os.21430.1.S1_at--998--8011Chr08:266764..266788 (25 bp)
GGAGGTCTTATTTCAGTCGAGGACA
LOC_Os08g01420
Os.21430.1.S1_at--1153--6111Chr08:266649..266673 (25 bp)
GAGTGTATGACTAACCCTGAATATT
LOC_Os08g01420
Os.21430.1.S1_at--914--6931Chr08:266564..266588 (25 bp)
GTAGTGTAGCTATATCTCCAGATGA
LOC_Os08g01420
Os.21430.1.S1_at--444--6511Chr08:266507..266531 (25 bp)
GATATTTGTGGTGAGTGTTGACCTC
NONE
Target Sequence 
TATGTAGTCTTTTAGCTGGGCGGAATGATGTGTNTGTNTTACTTGTNCACCTTCCTTCTTTNACCCCCTTNTCAGTGACC
NTTGTGAATGTTGTCCTGTACTTGCCCTGTGATGGTATTCTTAAACNNNTTTTTTTGGGGGAAATATGATTTTGTTTTTT
TAATCTCCTTTTTATTGCTTGATTCGTCATTGTTTATAGCCTGTGATCGATGATTGTGAAGGTTTATAGTCTGTATGTTG
TGTATGTAATGGTTTGGTTGATCCTGAAGCTTTTTGGAGGTCTTATTTCAGTCGAGGACAAGCATGAGAGTCAAGGAAGA
AAGTGGATCTTCATTTTGTCAGACAATTGTGACAGTCATGGAGCATGTAAGTAGTACTAGTATATAGTTTGAGTGTATGA
CTAACCCTGAATATTCATTCCTATAGTAAATAGTACTCCTATATCATATTAGAGATTCTGTGGTTGGATTAATAAGTAGT
GTAGCTATATCTCCAGATGATGAATTTATATGTGTCCTTGATATGAATTAATGATATTTGTGGTGAGTGTTGACCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21430.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis