Browse Element(s) Details


Os.21430.2.S1_x_at

Description gb:AK102260.1
DB_XREF= gi:32987469
TID=Os.21430.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21430 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033099D14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033088K07, full insert sequence.
FL= gb:AK102260.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0142011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01390Os.20083.1.S1_at11/118+244242..252410Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os08g01400Os.49551.1.S1_at11/118+253666..254973expressed protein
LOC_Os08g01410Os.9638.1.S1_at11/118+262378..265730glucose-6-phosphate/phosphate translocator, putative, expressed
LOC_Os08g01420Os.21430.2.S1_x_at11/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01420Os.21430.2.S1_at11/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01420Os.21430.1.S1_at10/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01430Os.18020.1.S1_at11/118+271660..275000F-box domain containing protein, expressed
LOC_Os08g01440OsAffx.28974.1.S1_at11/118+276869..277765hypothetical protein
LOC_Os08g01450OsAffx.28975.2.S1_at11/118+282431..283954Cytochrome P450 71C4, putative, expressed
LOC_Os08g01450Os.38346.1.S1_x_at1/118+282431..283954Cytochrome P450 71C4, putative, expressed
LOC_Os08g01460OsAffx.28976.1.S1_at10/118+284948..285726hypothetical protein
LOC_Os08g01470OsAffx.28975.1.S1_at11/118+287030..288535Cytochrome P450 family protein
LOC_Os08g01470Os.38346.1.S1_x_at1/118+287030..288535Cytochrome P450 family protein
LOC_Os08g01480Os.50798.1.S1_at9/118+290626..292020Cytochrome P450 71C4, putative, expressed
LOC_Os08g01490Os.15815.1.S1_at11/118+295361..297693Cytochrome P450 71C4, putative, expressed
LOC_Os08g01490Os.15815.2.S1_x_at11/118+295361..297693Cytochrome P450 71C4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21430.2.S1_x_at--1134--4931Chr08:267884..267908 (25 bp)
GCATTGTTCAACCTGCAGCTTCAAG
LOC_Os08g01420
Os.21430.2.S1_x_at--394--9771Chr08:267830..267854 (25 bp)
TAATGTTGCCCATGACTGCTTGCAT
LOC_Os08g01420
Os.21430.2.S1_x_at--919--8671Chr08:267796..267820 (25 bp)
TGTGTTTTGTGTGACCAGCTCGAGC
LOC_Os08g01420
Os.21430.2.S1_x_at--538--1271Chr08:267752..267776 (25 bp)
AGATCCCAAGCTTCCCATAAAAATT
LOC_Os08g01420
Os.21430.2.S1_x_at--756--2551Chr08:267656..267680 (25 bp)
AACTGCCCTGTCAAACTTGTGCAAA
LOC_Os08g01420
Os.21430.2.S1_x_at--442--6571Chr08:267600..267624 (25 bp)
GATTCATGGTATGCGGACATCCTTA
LOC_Os08g01420
Os.21430.2.S1_x_at--393--8131Chr08:267586..267610 (25 bp)
GGACATCCTTACTGCGTTTACAAGT
LOC_Os08g01420
Os.21430.2.S1_x_at--233--2831Chr08:267565..267589 (25 bp)
AAGTTCTATCATATCCGATGCCTGA
LOC_Os08g01420
Os.21430.2.S1_x_at--531--4231Chr08:267551..267575 (25 bp)
CCGATGCCTGAAAACAAGCCAGCTT
LOC_Os08g01420
Os.21430.2.S1_x_at--116--1451Chr08:267510..267534 (25 bp)
AGAAGCTTGGTTGCTGGTACTGCCC
LOC_Os08g01420
Os.21430.2.S1_x_at--311--171Chr08:267347..267371 (25 bp)
ATTTTGCAAGATCCGCAGGGCAGCG
LOC_Os08g01420
Target Sequence 
GCATTGTTCAACCTGCAGCTTCAAGAAAAAAGAATTGGCTGCAGATACCACGAATAATGTTGCCCATGACTGCTTGCATG
GTGGTAACTGTGTTTTGTGTGACCAGCTCGAGCTGGTGAAGACAGAAGAAGAAGATCCCAAGCTTCCCATAAAAATTGAA
TTAGCTGAAGAAAGAGAGGGGAGCTCCGTCTCAAGCATGGGGGAAGACAATGAACCAGACCTGTCAACAACTGCCCTGTC
AAACTTGTGCAAACACTGTGGCACATGCGAAGACGATGACAAGAGATTCATGGTATGCGGACATCCTTACTGCGTTTACA
AGTTCTATCATATCCGATGCCTGAAAACAAGCCAGCTTGCAATTGAGCAACAAAAGAAGCTTGGTTGCTGGTACTGCCCC
TCTTGCCTCTGCAGAGGGTGCTTCCAAGACAAGGATGATGACCAGATAGTCATGTGTGATGGCTGTGATGAAGGTTATCA
CATATATTGCATGAGACCAGCACGCAACACTATCCCCAAAGGTAAGTGGTACTGTACATTTTGCAAGATCCGCAGGGCAG
CG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21430.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis