Browse Element(s) Details


Os.50798.1.S1_at

Description gb:AK058639.1
DB_XREF= gi:32968657
TID=Os.50798.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50798 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-D09, full insert sequence.
FL= gb:AK058639.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g014809/11Cytochrome P450 71C4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01410Os.9638.1.S1_at11/118+262378..265730glucose-6-phosphate/phosphate translocator, putative, expressed
LOC_Os08g01420Os.21430.2.S1_x_at11/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01420Os.21430.2.S1_at11/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01420Os.21430.1.S1_at10/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01430Os.18020.1.S1_at11/118+271660..275000F-box domain containing protein, expressed
LOC_Os08g01440OsAffx.28974.1.S1_at11/118+276869..277765hypothetical protein
LOC_Os08g01450OsAffx.28975.2.S1_at11/118+282431..283954Cytochrome P450 71C4, putative, expressed
LOC_Os08g01450Os.38346.1.S1_x_at1/118+282431..283954Cytochrome P450 71C4, putative, expressed
LOC_Os08g01460OsAffx.28976.1.S1_at10/118+284948..285726hypothetical protein
LOC_Os08g01470OsAffx.28975.1.S1_at11/118+287030..288535Cytochrome P450 family protein
LOC_Os08g01470Os.38346.1.S1_x_at1/118+287030..288535Cytochrome P450 family protein
LOC_Os08g01480Os.50798.1.S1_at9/118+290626..292020Cytochrome P450 71C4, putative, expressed
LOC_Os08g01490Os.15815.1.S1_at11/118+295361..297693Cytochrome P450 71C4, putative, expressed
LOC_Os08g01490Os.15815.2.S1_x_at11/118+295361..297693Cytochrome P450 71C4, putative, expressed
LOC_Os08g01500NANA8+300821..301111hypothetical protein
LOC_Os08g01510NANA8+301981..303580Cytochrome P450 71C4, putative, expressed
LOC_Os08g01520NANA8+312618..314665Cytochrome P450 71C4, putative
LOC_Os08g01530NANA8+315870..316544expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50798.1.S1_at--103--2551Chr08:291201..291225 (25 bp)
AACTCATTGCTACTCGGTGGTTTCA
LOC_Os08g01480
Os.50798.1.S1_at--212--8891Chr08:291172..291196 (25 bp)
TGAGGATTACTTCCCCAATTTGGCG
LOC_Os08g01480
Os.50798.1.S1_at--884--9911Chr08:291139..291163 (25 bp)
TACTGTTAGGAGGTTGCTTTGCGCC
LOC_Os08g01480
Os.50798.1.S1_at--616--9151Chr08:291120..291144 (25 bp)
TGCGCCAAGGCCCATAATGTCAACA
LOC_Os08g01480
Os.50798.1.S1_at--495--1311Chr08:291093..291117 (25 bp)
AGATGGGACCAACTGCTCGACAAGC
LOC_Os08g01480
Os.50798.1.S1_at--686--1111Chr08:291009..291033 (25 bp)
AGTGATTTCATCGATGTCCTTCTCT
LOC_Os08g01480
Os.50798.1.S1_at--605--1351Chr08:290896..290920 (25 bp)
AGAGCTTGAATACGCCATGGCCGAG
LOC_Os08g01480
Os.50798.1.S1_at--1036--9771NONE
TAAGGGAGATGCTTCGGCTACACCT
NONE
Os.50798.1.S1_at--212--4311Chr08:290706..290730 (25 bp)
CCTACCTCTCTATTGCTGAATGTGA
LOC_Os08g01480
Os.50798.1.S1_at--449--8511Chr08:290657..290681 (25 bp)
TGGCACACGTGTCTTCGTCAATGCA
LOC_Os08g01480
Os.50798.1.S1_at--804--3191NONE
CAATGCATGGGCTCTGTCCGGAGAC
NONE
Target Sequence 
AACTCATTGCTACTCGGTGGTTTCAATCTTGAGGATTACTTCCCCAATTTGGCGAGGGTAACTACTGTTAGGAGGTTGCT
TTGCGCCAAGGCCCATAATGTCAACAAGAGATGGGACCAACTGCTCGACAAGCTCATCGATGATCATGCCACCAAACGGT
CCTCCTCGGTGCTAGACCTAGACAATGAAGAGAGTGATTTCATCGATGTCCTTCTCTCCATTCAGCATGAATACGGTCTC
ACTAGAGACAACGTCAAGGCAATCTTGGTGATCATGTTCGAGGGCGGCACGGACACGGCGTACATAGAGCTTGAATACGC
CATGGCCGAGTTGATTCGGAAGCCCCAACTAATGGCCAAGCTACAGGCCGAGGTTAGGAGTGTGGTACCAAGAGGGCAGG
AGATAGTTACTGAAGAGCAACTGGGAAGAATGCCCTACTAAAGGCAGTGATAAGGGAGATGCTTCGGCTACACCTCGCAG
GGCCACTTCTCGTACCCTACCTCTCTATTGCTGAATGTGATATCGAGGGCTACACAATACCCTCTGGCACACGTGTCTTC
GTCAATGCATGGGCTCTGTCCGGAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis