Browse Element(s) Details


OsAffx.28976.1.S1_at

Description tigr:9636.m00045
TID=OsAffx.28976.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0146010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01410Os.9638.1.S1_at11/118+262378..265730glucose-6-phosphate/phosphate translocator, putative, expressed
LOC_Os08g01420Os.21430.2.S1_x_at11/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01420Os.21430.2.S1_at11/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01420Os.21430.1.S1_at10/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01430Os.18020.1.S1_at11/118+271660..275000F-box domain containing protein, expressed
LOC_Os08g01440OsAffx.28974.1.S1_at11/118+276869..277765hypothetical protein
LOC_Os08g01450OsAffx.28975.2.S1_at11/118+282431..283954Cytochrome P450 71C4, putative, expressed
LOC_Os08g01450Os.38346.1.S1_x_at1/118+282431..283954Cytochrome P450 71C4, putative, expressed
LOC_Os08g01460OsAffx.28976.1.S1_at10/118+284948..285726hypothetical protein
LOC_Os08g01470OsAffx.28975.1.S1_at11/118+287030..288535Cytochrome P450 family protein
LOC_Os08g01470Os.38346.1.S1_x_at1/118+287030..288535Cytochrome P450 family protein
LOC_Os08g01480Os.50798.1.S1_at9/118+290626..292020Cytochrome P450 71C4, putative, expressed
LOC_Os08g01490Os.15815.1.S1_at11/118+295361..297693Cytochrome P450 71C4, putative, expressed
LOC_Os08g01490Os.15815.2.S1_x_at11/118+295361..297693Cytochrome P450 71C4, putative, expressed
LOC_Os08g01500NANA8+300821..301111hypothetical protein
LOC_Os08g01510NANA8+301981..303580Cytochrome P450 71C4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28976.1.S1_at--473--4671Chr08:284979..285003 (25 bp)
GCGGTGGAATCCAGCGGGTGGCGAG
LOC_Os08g01460
OsAffx.28976.1.S1_at--1086--7591Chr08:285159..285183 (25 bp)
GGGAATCTCGCTGTCACCTTCTTGA
LOC_Os08g01460
OsAffx.28976.1.S1_at--856--3791Chr08:285165..285189 (25 bp)
CTCGCTGTCACCTTCTTGAGAAGAA
LOC_Os08g01460
OsAffx.28976.1.S1_at--164--8351NONE
GGCGGCGGCGTGATAGATATACTTA
NONE
OsAffx.28976.1.S1_at--400--6511Chr08:285496..285520 (25 bp)
GATATACTTACAACTGCATCGCCGT
LOC_Os08g01460
OsAffx.28976.1.S1_at--405--2051Chr08:285501..285525 (25 bp)
ACTTACAACTGCATCGCCGTCTACA
LOC_Os08g01460
OsAffx.28976.1.S1_at--1064--4491Chr08:285516..285540 (25 bp)
GCCGTCTACAACTGTGGGCGTCAAG
LOC_Os08g01460
OsAffx.28976.1.S1_at--596--7131Chr08:285519..285543 (25 bp)
GTCTACAACTGTGGGCGTCAAGGAT
LOC_Os08g01460
OsAffx.28976.1.S1_at--687--3251Chr08:285524..285548 (25 bp)
CAACTGTGGGCGTCAAGGATGCCGC
LOC_Os08g01460
OsAffx.28976.1.S1_at--587--4531Chr08:285595..285619 (25 bp)
GCCGCCTGCCAAGAGCCTAGAGAGA
LOC_Os08g01460
OsAffx.28976.1.S1_at--1124--3811Chr08:285600..285624 (25 bp)
CTGCCAAGAGCCTAGAGAGAAGAGT
LOC_Os08g01460
Target Sequence 
GCGGTGGAATCCAGCGGGTGGCGAGGCGGCGGCGGCACCGCCGAAGCTGTGGGGATGTAGGAGGGTGGTGGGCCGGCGTC
GGCGGCGGGGGCAAAGCAAGCATGAGATTAGGAGGCGGCGGCCGGTGGTGGCGGATCCAGCGACGGGGAGCTGCCGGAGA
CGGGGAAGACGGCGGAGCGGGGGAATCTCGCTGTCACCTTCTTGAGAAGAAAGAGAGGGGGGGTGGGGGAGGGGGCCTCG
CCGGCGTCGTTGACTCCTTCCGGCCAGCCGGCGAGGCGGGCGGCGGCGTGATAGATATACTTACAACTGCATCGCCGTCT
ACAACTGTGGGCGTCAAGGATGCCGCCGCCGGCTTCCCTGTCGTCGACTTCTCCCGCGCCTCCGCCCTCCCCGCCGCCTG
CCAAGAGCCTAGAGAGAAGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis