Browse Element(s) Details


OsAffx.28974.1.S1_at

Description tigr:9636.m00043
TID=OsAffx.28974.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0144011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01390Os.20083.1.S1_at11/118+244242..252410Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os08g01400Os.49551.1.S1_at11/118+253666..254973expressed protein
LOC_Os08g01410Os.9638.1.S1_at11/118+262378..265730glucose-6-phosphate/phosphate translocator, putative, expressed
LOC_Os08g01420Os.21430.2.S1_x_at11/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01420Os.21430.2.S1_at11/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01420Os.21430.1.S1_at10/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01430Os.18020.1.S1_at11/118+271660..275000F-box domain containing protein, expressed
LOC_Os08g01440OsAffx.28974.1.S1_at11/118+276869..277765hypothetical protein
LOC_Os08g01450OsAffx.28975.2.S1_at11/118+282431..283954Cytochrome P450 71C4, putative, expressed
LOC_Os08g01450Os.38346.1.S1_x_at1/118+282431..283954Cytochrome P450 71C4, putative, expressed
LOC_Os08g01460OsAffx.28976.1.S1_at10/118+284948..285726hypothetical protein
LOC_Os08g01470OsAffx.28975.1.S1_at11/118+287030..288535Cytochrome P450 family protein
LOC_Os08g01470Os.38346.1.S1_x_at1/118+287030..288535Cytochrome P450 family protein
LOC_Os08g01480Os.50798.1.S1_at9/118+290626..292020Cytochrome P450 71C4, putative, expressed
LOC_Os08g01490Os.15815.1.S1_at11/118+295361..297693Cytochrome P450 71C4, putative, expressed
LOC_Os08g01490Os.15815.2.S1_x_at11/118+295361..297693Cytochrome P450 71C4, putative, expressed
LOC_Os08g01500NANA8+300821..301111hypothetical protein
LOC_Os08g01510NANA8+301981..303580Cytochrome P450 71C4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28974.1.S1_at--553--6171Chr08:276943..276967 (25 bp)
GAGGATGAGCAAGGCGTCGGGTGCA
LOC_Os08g01440
OsAffx.28974.1.S1_at--537--7191Chr08:276958..276982 (25 bp)
GTCGGGTGCAAGACGGCTAACCACG
LOC_Os08g01440
OsAffx.28974.1.S1_at--310--3731Chr08:276974..276994 (21 bp)
CTAACCACGGCCGACACTGAGTTGT
LOC_Os08g01440
OsAffx.28974.1.S1_at--615--3331Chr08:276979..277323 (25 bp)
CACGGCCGACACTGAGTTGTCTGAA
LOC_Os08g01440
OsAffx.28974.1.S1_at--735--8411Chr08:276982..277326 (25 bp)
GGCCGACACTGAGTTGTCTGAACAA
LOC_Os08g01440
OsAffx.28974.1.S1_at--76--1251Chr08:277313..277337 (25 bp)
AGTTGTCTGAACAAGTGCAGTTTGT
LOC_Os08g01440
OsAffx.28974.1.S1_at--635--5511Chr08:277321..277345 (25 bp)
GAACAAGTGCAGTTTGTGAGGTCAA
LOC_Os08g01440
OsAffx.28974.1.S1_at--192--6871Chr08:277332..277356 (25 bp)
GTTTGTGAGGTCAAAATCTCTATTT
LOC_Os08g01440
OsAffx.28974.1.S1_at--206--3771Chr08:277349..277373 (25 bp)
CTCTATTTGAGATGTCATTGAGCAA
LOC_Os08g01440
OsAffx.28974.1.S1_at--341--7391Chr08:277700..277724 (25 bp)
GTGAGGGCTGAATTTATGCAGCGTA
LOC_Os08g01440
OsAffx.28974.1.S1_at--1084--151Chr08:277711..277735 (25 bp)
ATTTATGCAGCGTAGAACAGGAAAG
LOC_Os08g01440
Target Sequence 
GAGGATGAGCAAGGCGTCGGGTGCAAGACGGCTAACCACGGCCGACACTGAGTTGTCTGAACAAGTGCAGTTTGTGAGGT
CAAAATCTCTATTTGAGATGTCATTGAGCAATTTGCAGGTGGTGAGGGCTGAATTTATGCAGCGTAGAACAGGAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28974.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis