Browse Element(s) Details


Os.20083.1.S1_at

Description gb:AK120989.1
DB_XREF= gi:37990612
TID=Os.20083.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.20083 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013104D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042P03, full insert sequence.
FL= gb:AK120989.1 gb:AK067468.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0139011/11Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01360Os.20625.1.S1_at11/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.1.S1_x_at11/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.2.S1_at10/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.2.S1_x_at10/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360OsAffx.27554.1.S1_at1/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01370Os.10590.1.S1_s_at11/118+227469..228184expressed protein
LOC_Os08g01370Os.10590.1.S1_at11/118+227469..228184expressed protein
LOC_Os08g01380Os.12393.2.S1_x_at11/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01380Os.12393.2.S1_s_at11/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01380Os.12393.2.S1_at10/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01380Os.1314.1.S1_at1/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01390Os.20083.1.S1_at11/118+244242..252410Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os08g01400Os.49551.1.S1_at11/118+253666..254973expressed protein
LOC_Os08g01410Os.9638.1.S1_at11/118+262378..265730glucose-6-phosphate/phosphate translocator, putative, expressed
LOC_Os08g01420Os.21430.2.S1_x_at11/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01420Os.21430.2.S1_at11/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01420Os.21430.1.S1_at10/118+266507..270631PHD-finger family protein, expressed
LOC_Os08g01430Os.18020.1.S1_at11/118+271660..275000F-box domain containing protein, expressed
LOC_Os08g01440OsAffx.28974.1.S1_at11/118+276869..277765hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0008270molecular_functionzinc ion binding
GO:0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20083.1.S1_at--13--10111Chr08:251813..251837 (25 bp)
TATGGACTATTCTCTGCTTGTGGGA
LOC_Os08g01390
Os.20083.1.S1_at--798--471Chr08:251881..251905 (25 bp)
ATCTGAGGCAGTACACTTGGGACAA
LOC_Os08g01390
Os.20083.1.S1_at--1152--5511Chr08:251924..251948 (25 bp)
GAAAAGTTCCCTAGTAGTGCCAAAG
LOC_Os08g01390
Os.20083.1.S1_at--991--5271Chr08:251948..251972 (25 bp)
GAATGTTTCACCAACTGTAGTTTCA
LOC_Os08g01390
Os.20083.1.S1_at--1058--2811Chr08:252000..252024 (25 bp)
AAGTTCATGGCGAAGCACTTCCTCA
LOC_Os08g01390
Os.20083.1.S1_at--96--2071Chr08:252016..252040 (25 bp)
ACTTCCTCACAGTTCCAGATACATG
LOC_Os08g01390
Os.20083.1.S1_at--136--4991Chr08:252131..252155 (25 bp)
GCATCCAATTGAGGCTGAGACAGTT
LOC_Os08g01390
Os.20083.1.S1_at--924--9471Chr08:252170..252194 (25 bp)
TCTGACAGTTGTTGAATCCTATCCT
LOC_Os08g01390
Os.20083.1.S1_at--588--2971Chr08:252229..252253 (25 bp)
AATGGTGTACATAGGAGGGCCTCAC
LOC_Os08g01390
Os.20083.1.S1_at--477--1091Chr08:252244..252268 (25 bp)
AGGGCCTCACTCACTAATTGATTTT
LOC_Os08g01390
Os.20083.1.S1_at--404--3171Chr08:252259..252283 (25 bp)
AATTGATTTTGGCAACCCCAGAGAA
LOC_Os08g01390
Target Sequence 
TATGGACTATTCTCTGCTTGTGGGAGTGGACAAAGAAAAGCATGAGCTTGTATTTGGCATCATTGATTATCTGAGGCAGT
ACACTTGGGACAAGCAGCTGGAAACATGGGTGAAAAGTTCCCTAGTAGTGCCAAAGAATGTTTCACCAACTGTAGTTTCA
CCCAAGGAGTACAAGAAAAGGTTCCGGAAGTTCATGGCGAAGCACTTCCTCACAGTTCCAGATACATGGAGTTCAGAGAA
TTCTTCCGGACCAAGCAAATNGTTTGGGCATAGCAATAACATGTTGGTAGAAGTCCATAGTGATGACAATNTGCTTCAGC
ATCCAATTGAGGCTGAGACAGTTGTATAAATGACTTCTCTGACAGTTGTTGAATCCTATCCTGTTGNTACTTGGCTTTTT
TTTTTTCATTTTGTAAAATGGTGTACATAGGAGGGCCTCACTCACTAATTGATTTTGGCAACCCCAGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20083.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis