Browse Element(s) Details


Os.10590.1.S1_at

Description gb:AK064224.1
DB_XREF= gi:32974242
TID=Os.10590.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10590 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-G04, full insert sequence.
FL= gb:AK064224.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0137011/11expressed protein
LOC_Os01g668701/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01330Os.56943.1.S1_at11/118+204075..206064no apical meristem, putative, expressed
LOC_Os08g01339NANA8+210391..211728NA
LOC_Os08g01350Os.34066.1.S1_at11/118+216137..218910IP07178p, putative, expressed
LOC_Os08g01350Os.15047.1.S1_s_at11/118+216137..218910IP07178p, putative, expressed
LOC_Os08g01360Os.20625.1.S1_at11/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.1.S1_x_at11/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.2.S1_at10/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.2.S1_x_at10/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360OsAffx.27554.1.S1_at1/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01370Os.10590.1.S1_s_at11/118+227469..228184expressed protein
LOC_Os08g01370Os.10590.1.S1_at11/118+227469..228184expressed protein
LOC_Os08g01380Os.12393.2.S1_x_at11/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01380Os.12393.2.S1_s_at11/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01380Os.12393.2.S1_at10/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01380Os.1314.1.S1_at1/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01390Os.20083.1.S1_at11/118+244242..252410Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10590.1.S1_at--610--651Chr08:227735..227759 (25 bp)
ATGCACATGCGTGCTAGAACCGTCT
LOC_Os08g01370
Os.10590.1.S1_at--457--5111Chr08:227733..227757 (25 bp)
GCACATGCGTGCTAGAACCGTCTCC
LOC_Os08g01370
Os.10590.1.S1_at--991--411Chr08:227562..227586 (25 bp)
ATCATCGCCTCGGTCGATATATAAT
LOC_Os08g01370
Os.10590.1.S1_at--72--3551Chr08:227560..227584 (25 bp)
CATCGCCTCGGTCGATATATAATTA
LOC_Os08g01370
Os.10590.1.S1_at--1057--4451Chr08:227556..227580 (25 bp)
GCCTCGGTCGATATATAATTACTCT
LOC_Os08g01370
Os.10590.1.S1_at--499--9431Chr08:227553..227577 (25 bp)
TCGGTCGATATATAATTACTCTCTC
LOC_Os08g01370
Os.10590.1.S1_at--362--7211Chr08:227550..227574 (25 bp)
GTCGATATATAATTACTCTCTCCTT
LOC_Os08g01370
Os.10590.1.S1_at--822--6511Chr08:227547..227571 (25 bp)
GATATATAATTACTCTCTCCTTCTC
LOC_Os08g01370
Os.10590.1.S1_at--963--9511Chr08:227521..227545 (25 bp)
TCTCTTCCTCTTTCTAAATTAATCA
LOC_Os08g01370
Os.10590.1.S1_at--834--10651Chr08:227517..227541 (25 bp)
TTCCTCTTTCTAAATTAATCATCGT
LOC_Os08g01370
Os.10590.1.S1_at--27--3772Chr08:227514..227538 (25 bp)
CTCTTTCTAAATTAATCATCGTATA
LOC_Os08g01370
Target Sequence 
ATGCACATGCGTGCTAGAACCGTCTCCTCTCCTCTCCTCTCCTGCTAATTAAGCCAGGCCGTATACGTATGTGTGTATGT
AATACTAGTACGAATAATGCATAGTACTACTATGCGACAAGCTGCTAGCTAGTAGCTAGCCTTTTTTTTTCAAATAGAAC
TATATAATCCATGATCATCGCCTCGGTCGATATATAATTACTCTCTCCTTCTCTTCTCTTCCTCTTTCTAAATTAATCAT
CGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10590.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis