Browse Element(s) Details


Os.10590.1.S1_s_at

Description gb:AK064224.1
DB_XREF= gi:32974242
TID=Os.10590.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10590 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-G04, full insert sequence.
FL= gb:AK064224.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0137011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01330Os.56943.1.S1_at11/118+204075..206064no apical meristem, putative, expressed
LOC_Os08g01339NANA8+210391..211728NA
LOC_Os08g01350Os.34066.1.S1_at11/118+216137..218910IP07178p, putative, expressed
LOC_Os08g01350Os.15047.1.S1_s_at11/118+216137..218910IP07178p, putative, expressed
LOC_Os08g01360Os.20625.1.S1_at11/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.1.S1_x_at11/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.2.S1_at10/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.2.S1_x_at10/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360OsAffx.27554.1.S1_at1/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01370Os.10590.1.S1_s_at11/118+227469..228184expressed protein
LOC_Os08g01370Os.10590.1.S1_at11/118+227469..228184expressed protein
LOC_Os08g01380Os.12393.2.S1_x_at11/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01380Os.12393.2.S1_s_at11/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01380Os.12393.2.S1_at10/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01380Os.1314.1.S1_at1/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01390Os.20083.1.S1_at11/118+244242..252410Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10590.1.S1_s_at--1037--7351Chr08:228004..228028 (25 bp)
GTGAACGGTGACGACGAGATGCTAC
LOC_Os08g01370
Os.10590.1.S1_s_at--563--5771Chr08:227992..228016 (25 bp)
GACGAGATGCTACGGACTGGCTTCA
LOC_Os08g01370
Os.10590.1.S1_s_at--720--6331Chr08:227987..228011 (25 bp)
GATGCTACGGACTGGCTTCATCAAC
LOC_Os08g01370
Os.10590.1.S1_s_at--504--3471Chr08:227858..227882 (25 bp)
CAGGAAGATCGCAGAGTCGGAGCCC
LOC_Os08g01370
Os.10590.1.S1_s_at--895--511Chr08:227851..227875 (25 bp)
ATCGCAGAGTCGGAGCCCGTGGACC
LOC_Os08g01370
Os.10590.1.S1_s_at--1142--9491Chr08:227703..227727 (25 bp)
TCTCCTCTCCTGCTAATTAAGCCAG
LOC_Os08g01370
Os.10590.1.S1_s_at--748--10491Chr08:227687..227711 (25 bp)
TTAAGCCAGGCCGTATACGTATGTG
LOC_Os08g01370
Os.10590.1.S1_s_at--1159--4331Chr08:227682..227706 (25 bp)
CCAGGCCGTATACGTATGTGTGTAT
LOC_Os08g01370
Os.10590.1.S1_s_at--319--291Chr08:227635..227659 (25 bp)
ATAGTACTACTATGCGACAAGCTGC
LOC_Os08g01370
Os.10590.1.S1_s_at--561--2031Chr08:227627..227651 (25 bp)
ACTATGCGACAAGCTGCTAGCTAGT
LOC_Os08g01370
Os.10590.1.S1_s_at--356--251Chr08:227574..227598 (25 bp)
ATATAATCCATGATCATCGCCTCGG
LOC_Os08g01370
Target Sequence 
GTGAACGGTGACGACGAGATGCTACGGACTGGCTTCATCAACGGCACCCCGCTCGAGGCCGGCAAGGTCGCTGACTCCCA
GCCCGTCGATCTCTTCGACCAGGCTCGCCGCGTCTGTCCGGAGGAGGNAAGAAGATGAGGCCGGCTGCAGGAAGATCGCA
GAGTCGGAGCCCGTGGACCTCTTCTCCGACGCCGGCCGCGTCGCGCANTCAGCAGCAGCACAAGGTNGTGGGCCGCCAAG
CGTAATCGCGCCCTGCCCCGCCTTCAAGCATATGCACATGCGTGCTAGAACCGTCTCCTCTCCTCTCCTCTCCTGCTAAT
TAAGCCAGGCCGTATACGTATGTGTGTATGTAATACTAGTACGAATAATGCATAGTACTACTATGCGACAAGCTGCTAGC
TAGTAGCTAGCCTTTTTTTTTCAAATAGAACTATATAATCCATGATCATCGCCTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10590.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis