Browse Element(s) Details


Os.34066.1.S1_at

Description gb:AK072948.1
DB_XREF= gi:32982971
TID=Os.34066.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34066 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023143E24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023143E24, full insert sequence.
FL= gb:AK072948.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0135011/11IP07178p, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01310Os.9721.1.S1_at10/118+189472..194084MAP3K-like protein kinase, putative, expressed
LOC_Os08g01320Os.15790.1.S1_at11/118+195020..197495BTB/POZ domain-containing protein, putative, expressed
LOC_Os08g01330Os.56943.1.S1_at11/118+204075..206064no apical meristem, putative, expressed
LOC_Os08g01339NANA8+210391..211728NA
LOC_Os08g01350Os.34066.1.S1_at11/118+216137..218910IP07178p, putative, expressed
LOC_Os08g01350Os.15047.1.S1_s_at11/118+216137..218910IP07178p, putative, expressed
LOC_Os08g01360Os.20625.1.S1_at11/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.1.S1_x_at11/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.2.S1_at10/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.2.S1_x_at10/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360OsAffx.27554.1.S1_at1/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01370Os.10590.1.S1_s_at11/118+227469..228184expressed protein
LOC_Os08g01370Os.10590.1.S1_at11/118+227469..228184expressed protein
LOC_Os08g01380Os.12393.2.S1_x_at11/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01380Os.12393.2.S1_s_at11/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01380Os.12393.2.S1_at10/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01380Os.1314.1.S1_at1/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34066.1.S1_at--606--6371Chr08:216694..216718 (25 bp)
GATCCTTATTTTGGTAAGTGCATGT
LOC_Os08g01350
Os.34066.1.S1_at--886--2851Chr08:216679..216703 (25 bp)
AAGTGCATGTCTCATCCAGTTGATC
LOC_Os08g01350
Os.34066.1.S1_at--823--9051Chr08:216676..216700 (25 bp)
TGCATGTCTCATCCAGTTGATCATT
LOC_Os08g01350
Os.34066.1.S1_at--19--3451Chr08:216663..216687 (25 bp)
CAGTTGATCATTTCTGTCTTCCATC
LOC_Os08g01350
Os.34066.1.S1_at--51--10611Chr08:216652..216676 (25 bp)
TTCTGTCTTCCATCCCGTGCATTGT
LOC_Os08g01350
Os.34066.1.S1_at--1035--10651Chr08:216645..216669 (25 bp)
TTCCATCCCGTGCATTGTGGGCAAC
LOC_Os08g01350
Os.34066.1.S1_at--384--551Chr08:216641..216665 (25 bp)
ATCCCGTGCATTGTGGGCAACTGTT
LOC_Os08g01350
Os.34066.1.S1_at--13--4951Chr08:216634..216658 (25 bp)
GCATTGTGGGCAACTGTTTCTTGTC
LOC_Os08g01350
Os.34066.1.S1_at--200--31Chr08:216632..216656 (25 bp)
ATTGTGGGCAACTGTTTCTTGTCTT
LOC_Os08g01350
Os.34066.1.S1_at--503--8651Chr08:216628..216652 (25 bp)
TGGGCAACTGTTTCTTGTCTTGTTT
LOC_Os08g01350
Os.34066.1.S1_at--344--8771Chr08:216608..216632 (25 bp)
TGTTTCTGTAGGTGAACACTCTTGT
LOC_Os08g01350
Target Sequence 
GATCCTTATTTTGGTAAGTGCATGTCTCATCCAGTTGATCATTTCTGTCTTCCATCCCGTGCATTGTGGGCAACTGTTTC
TTGTCTTGTTTCTGTAGGTGAACACTCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34066.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis