Browse Element(s) Details


Os.9721.1.S1_at

Description gb:AK067883.1
DB_XREF= gi:32977901
TID=Os.9721.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9721 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013124M22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013124M22, full insert sequence.
FL= gb:AK060348.1 gb:AK067883.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0131010/11MAP3K-like protein kinase, putative, expressed
LOC_Os09g325321/1160S ribosomal protein L32, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01270Os.7969.1.S1_x_at11/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01270Os.7969.2.S1_at11/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01270OsAffx.27799.1.S1_at1/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01280OsAffx.28973.1.S1_at11/118+176623..178954ACT domain containing protein
LOC_Os08g01290Os.27120.1.S2_at11/118+180764..185532Tubby protein, putative, expressed
LOC_Os08g01290Os.27120.1.S1_at11/118+180764..185532Tubby protein, putative, expressed
LOC_Os08g01300NANA8+184899..188158zinc finger family protein, putative
LOC_Os08g01310Os.9721.1.S1_at10/118+189472..194084MAP3K-like protein kinase, putative, expressed
LOC_Os08g01320Os.15790.1.S1_at11/118+195020..197495BTB/POZ domain-containing protein, putative, expressed
LOC_Os08g01330Os.56943.1.S1_at11/118+204075..206064no apical meristem, putative, expressed
LOC_Os08g01339NANA8+210391..211728NA
LOC_Os08g01350Os.34066.1.S1_at11/118+216137..218910IP07178p, putative, expressed
LOC_Os08g01350Os.15047.1.S1_s_at11/118+216137..218910IP07178p, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9721.1.S1_at--82--7631Chr08:190034..190058 (25 bp)
GGGACATGTGTGATACCTCCACCTT
LOC_Os08g01310
Os.9721.1.S1_at--90--5171Chr08:189932..189956 (25 bp)
GCAATGGCTCGGGTTGTACTACCAA
LOC_Os08g01310
Os.9721.1.S1_at--899--5892Chr08:189903..189927 (25 bp)
GAGCTTCTTCTTCGGAGTGGCACTT
LOC_Os08g01310
Os.9721.1.S1_at--593--8031Chr08:189890..189914 (25 bp)
GGAGTGGCACTTCTGATCCTGGTCA
LOC_Os08g01310
Os.9721.1.S1_at--859--6371Chr08:189876..189900 (25 bp)
GATCCTGGTCATACTCTCTTATTAA
LOC_Os08g01310
Os.9721.1.S1_at--539--9771Chr08:189854..189878 (25 bp)
TAAGAGCAGACCCATTCACTTGAGC
LOC_Os08g01310
Os.9721.1.S1_at--626--9692Chr09:19420106..19420128 (22 bp)
TCACTTGAGCTTGTGCTGTCTTTGT
LOC_Os09g32532
Os.9721.1.S1_at--1116--3291Chr08:189798..189822 (25 bp)
CACATACTGTACTGCCATTCTGAGG
LOC_Os08g01310
Os.9721.1.S1_at--608--1691Chr08:189751..189775 (25 bp)
AGCCACCTGTTCCATTGGTTTGTAA
LOC_Os08g01310
Os.9721.1.S1_at--1102--5591Chr08:189676..189700 (25 bp)
GAAATTGTTCATGTGCCGAGCTGTA
LOC_Os08g01310
Os.9721.1.S1_at--287--6431Chr08:189469..189493 (25 bp)
GATCTTATGCACTTTATGTTCCAAG
NONE
Target Sequence 
GGGACATGTGTGATACCTCCACCTTCACCGCCGCCGTCGCCTCGGAAGGCACCCAGCGGCGGCAAGGGCACAAGTGCAGG
CGGCAGCTCCAGTTCCAGCGGCGCAATGGCTCGGGTTGTACTACCAAAGCTGAGCTTCTTCTTCGGAGTGGCACTTCTGA
TCCTGGTCATACTCTCTTATTAAGAGCAGACCCATTCACTTGAGCTTGTGCTGTCTTTGTGCTCTGCTGGTACAAGCACA
TACTGTACTGCCATTCTGAGGCAAAATTTTCTGCTCTTTTTTTAGCCACCTGTTCCATTGGTTTGTAACTTCTTTTTCTT
TTTTGTTAATGAGAGCTGTAGATGCCAGATTAGCTGGAGAAATTGTTCATGTGCCGAGCTGTAGATCATTCCTTTTATTT
GAGGCAATATTTTTCTGCATATCAAGTGATCTTATTGCTCATAAAATAACTGCAATCGCATTGTAAAAAAATGTTGTGGT
AAGACCTTTTACAGGTGCAAAATATGCCTATTATGCATAGNCAGCAAATGGAACAGATTCTGCATATGTCATCAGGATTA
TTCTTGATCTTATGCACTTTATGTTCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9721.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis